PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009780872.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 405aa    MW: 45680.3 Da    PI: 5.284
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009780872.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.44.8e-52321591128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelv +yL++k+ +k++++ ++++e+d+yk+ePw+L +  ++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++v 
  XP_009780872.1  32 LAPGFRFHPTDEELVRYYLRRKACAKPFRF-QAVSEIDVYKSEPWELAEysSLKTRDLEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRPVR 125
                     579*************************99.88**************84346777888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + k++++g+kktLvf++grap+g++t+Wvmheyrl
  XP_009780872.1 126 H-KSQTIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 159
                     *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-6225182IPR003441NAC domain
PROSITE profilePS5100557.92832182IPR003441NAC domain
PfamPF023653.8E-2834159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEQEGALVVV PAAVPVTTAT PKRAVAPPPT SLAPGFRFHP TDEELVRYYL RRKACAKPFR  60
FQAVSEIDVY KSEPWELAEY SSLKTRDLEW YFFSPVDRKY GNGSRLNRAT GKGYWKATGK  120
DRPVRHKSQT IGMKKTLVFH SGRAPDGKRT NWVMHEYRLT DEELERAGVV QDAFVLCRIF  180
QKSGLGPPNG DRYAPFIEEE WDDDTALLVP GGETEDDVAN GDEARVEGND LDQDARHKAP  240
PRQSENLLEP QPIPFICKRE RSPEDPEPLS LAQSKRSKRE DPSSSHANGS EDSTTSQQDP  300
PTTMMTTNYS PPSLLAFPLL EPLEPKESQP SNPPTFDSSN LEKSVPPGYL KFISNLENEI  360
LNVSMERETL KIEVMRAQAM INILQSRIDL LNKENEDLRR LVRGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-513118216165NO APICAL MERISTEM PROTEIN
1ut4_B6e-513118216165NO APICAL MERISTEM PROTEIN
1ut7_A6e-513118216165NO APICAL MERISTEM PROTEIN
1ut7_B6e-513118216165NO APICAL MERISTEM PROTEIN
3swm_A7e-513118219168NAC domain-containing protein 19
3swm_B7e-513118219168NAC domain-containing protein 19
3swm_C7e-513118219168NAC domain-containing protein 19
3swm_D7e-513118219168NAC domain-containing protein 19
3swp_A7e-513118219168NAC domain-containing protein 19
3swp_B7e-513118219168NAC domain-containing protein 19
3swp_C7e-513118219168NAC domain-containing protein 19
3swp_D7e-513118219168NAC domain-containing protein 19
4dul_A6e-513118216165NAC domain-containing protein 19
4dul_B6e-513118216165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5098670.0AF509867.1 Petunia x hybrida nam-like protein 4 (NH4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780872.10.0PREDICTED: NAC domain-containing protein 78-like
RefseqXP_016454404.10.0PREDICTED: NAC domain-containing protein 78-like
SwissprotQ9SQX91e-113NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A1S3YQB70.0A0A1S3YQB7_TOBAC; NAC domain-containing protein 78-like
TrEMBLA0A1U7WLM80.0A0A1U7WLM8_NICSY; NAC domain-containing protein 78-like
STRINGXP_009780872.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31402448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.21e-108NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]