PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009780710.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 243aa    MW: 27310.8 Da    PI: 10.282
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009780710.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.8e-1466110347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_009780710.1  66 PWTEEEHRIFLIGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 110
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.39459115IPR017930Myb domain
SuperFamilySSF466895.31E-1861116IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-1862114IPR006447Myb domain, plants
SMARTSM007174.4E-1063113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-1163109IPR009057Homeodomain-like
PfamPF002494.1E-1166110IPR001005SANT/Myb domain
CDDcd001675.03E-966111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRKCSHCGI TGHNSRTCKS QKAKIDEKKE DAITSNIDEN LDYKVSNGYL SDELVGRTLD  60
KKKGVPWTEE EHRIFLIGLE KLGKGDWRGI SRNFVTTRTP TQVASHAQKY FLRQNSLNRT  120
KRRRSLFDKV GMDKSTILLF DKRVTKTKES TSISYEKSAQ HGETNISMIN FSTSSSKDSK  180
SNSQQYSMPA TVVNLPFINS SDYISIQDSL NPDLDLTLAA PRQLNNQRRK SSGPLAGNTI  240
TVV
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780710.10.0PREDICTED: myb-like protein J isoform X2
RefseqXP_016450794.10.0PREDICTED: myb-like protein J isoform X2
SwissprotQ7XC574e-45MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A1S3YF531e-180A0A1S3YF53_TOBAC; myb-like protein J isoform X2
TrEMBLA0A1U7X2L21e-180A0A1U7X2L2_NICSY; myb-like protein J isoform X2
STRINGXP_009780709.11e-151(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-48MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]