PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009780707.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 236aa MW: 26668.8 Da PI: 4.863 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.6 | 7.8e-12 | 125 | 207 | 3 | 84 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 k l +sd + l+l +k++++ + + + + ++tl+d+sg ++W++ + k+ + +l++GW e++ ++L+ gD+v+++ XP_009780707.1 125 KNLRHSDLKRMEGLRLLRKYLDKLKTPLQAPADITLTDQSGeekKEWKMSV--VKTNLGLYLREGWFEYAAKHKLEIGDTVIIEA 207 678889999999*********999777778899******************..999999***********************994 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.5E-13 | 114 | 207 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.925 | 123 | 221 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.3E-11 | 123 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.94E-11 | 125 | 206 | No hit | No description |
Pfam | PF02362 | 1.7E-9 | 125 | 207 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MADEKSDAPD AVHTNNTLGN LTANEIVAEK EADAGKSVVK EKSTQDHNNK TVAEKEADAG 60 KAVIEEKNTQ DHNNEIVADA GKSEVEADQE SDDSYYGHID VYDFFVDEVP EIESSNINVE 120 TVLRKNLRHS DLKRMEGLRL LRKYLDKLKT PLQAPADITL TDQSGEEKKE WKMSVVKTNL 180 GLYLREGWFE YAAKHKLEIG DTVIIEALNV PEIKYEIRFD KNVKRPKKPN KAKTEV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780707.1 | 1e-172 | PREDICTED: uncharacterized protein LOC104229717 | ||||
TrEMBL | A0A1U7WL60 | 1e-170 | A0A1U7WL60_NICSY; uncharacterized protein LOC104229717 | ||||
STRING | XP_009780707.1 | 1e-171 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18219 | 3 | 3 |