PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009780690.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 367aa MW: 41639.6 Da PI: 7.5426

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009780690.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.2	2.3e-10	85	125	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k++rr+++NReAAr+sR RKka++++Le+ +L + ++L XP_009780690.1 85 KVQRRLAQNREAARKSRMRKKAYVQQLETSRMKLAQLEMEL 125 99**************************9776666665544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-5	81	141	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.232	83	127	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.31E-7	85	124	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.4E-8	85	128	No hit	No description
Pfam	PF00170	2.1E-7	85	125	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	88	103	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.1E-28	172	244	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MNMSSPSTQF APTTRMGIFE PFHHMSIWED TFRGDIMPGT GACMVAQPND RVNDRVDDKS 60 GYTSSEQLIP SGSEDNQAGK SVSEKVQRRL AQNREAARKS RMRKKAYVQQ LETSRMKLAQ 120 LEMELERARQ QGLYVLGSNG NMGLSATINP GIAAFEIEYG LWVEEQQKKN VELRNVLQSH 180 VSEMELQLLV ESVLSQYYNL FRMKADAAKA DVFYLMSGMW RTSVERFFLW IGGFKPSELI 240 NVVMPQLEPL SDQQIVKICN LRHCCQQAED ALTQGMDKLQ QTLAQSILTM TTGMGSYSSQ 300 MLSSMEKLEA LESFVNQADH LRHQTLQQMS LILTTRQTAR GLLAFGEYLQ RLRALSSLWA 360 ARPREPT

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MNMSSPSTQF APTTRMGIFE PFHHMSIWED TFRGDIMPGT GACMVAQPND RVNDRVDDKS  60
GYTSSEQLIP SGSEDNQAGK SVSEKVQRRL AQNREAARKS RMRKKAYVQQ LETSRMKLAQ  120
LEMELERARQ QGLYVLGSNG NMGLSATINP GIAAFEIEYG LWVEEQQKKN VELRNVLQSH  180
VSEMELQLLV ESVLSQYYNL FRMKADAAKA DVFYLMSGMW RTSVERFFLW IGGFKPSELI  240
NVVMPQLEPL SDQQIVKICN LRHCCQQAED ALTQGMDKLQ QTLAQSILTM TTGMGSYSSQ  300
MLSSMEKLEA LESFVNQADH LRHQTLQQMS LILTTRQTAR GLLAFGEYLQ RLRALSSLWA  360
ARPREPT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780690.1	0.0	PREDICTED: transcription factor TGA1
Refseq	XP_016503964.1	0.0	PREDICTED: transcription factor TGA1-like
Swissprot	Q39237	1e-153	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A1S4CSG8	0.0	A0A1S4CSG8_TOBAC; transcription factor TGA1-like
TrEMBL	A0A1U7X2J3	0.0	A0A1U7X2J3_NICSY; transcription factor TGA1
STRING	XP_009780690.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-155	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]