PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009780540.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family EIL
Protein Properties Length: 490aa    MW: 55999.2 Da    PI: 5.0644
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009780540.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3394.21.8e-120263601353
                     XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
            EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 
                     ++lk+rmwkdqmll++lk+++ ++  +ke+  +++++ k +eq+rrkk+sraQD+iL YM+k+mevc  qGfv+gi+pekgk+v+g+sdsLr+WW
  XP_009780540.1  26 DDLKRRMWKDQMLLQKLKSMRSSS--KKESIDDESQQAKAQEQSRRKKTSRAQDSILMYMVKIMEVCGGQGFVFGIVPEKGKLVTGSSDSLRGWW 118
                     79******************9985..477778899999********************************************************* PP

                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT.--TT CS
            EIN3  96 kekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelg.lskd 189
                     +ekv+f++n+p+ai++  +  l++++e++    +ss+ h l+elqD+tlgSLLsalmqhc ppqr fple+g++pPWWPtGkelww  +g l+ +
  XP_009780540.1 119 REKVKFEKNAPIAIAECLPGLLVQQQENDILDPSSSYMHLLEELQDATLGSLLSALMQHCIPPQRTFPLERGLSPPWWPTGKELWWRDQGlLALE 213
                     *****************99999999999886669999*****************************************************9999* PP

                     --.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXXXXXXXXXXX..X CS
            EIN3 190 qgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqspkvtlsceqk..e 282
                     qg+ppy+kphdl kawkvsvL+avikhmsp++ ++r+l+ +sk+lq+km+ake+ ++++v+nqe+++++        l   ++++++s++++  e
  XP_009780540.1 214 QGPPPYRKPHDLNKAWKVSVLAAVIKHMSPDLGRMRRLVIKSKSLQNKMTAKETSTWCKVVNQEQALLE--------L--TQRALKISEKEDdkE 298
                     ****************************************************************99772........3..444555555544003 PP

                     XXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS
            EIN3 283 dvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353
                     d+   + s  ++ +            krk++++++a+ ++++v + cq+ ++ +s   l+f dkns+ ++e
  XP_009780540.1 299 DNLAFDGST-STLR--------RNDMKRKSNFEHRAMNMEQDVFYACQNLNCAQSGLGLGFVDKNSRIEHE 360
                     333333333.2222........234588889999999999***************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.5E-11026277No hitNo description
Gene3DG3DSA:1.10.3180.101.1E-63152282IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.88E-56156280IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MTEPLSPIGE VEEPEEEENE EVISYDDLKR RMWKDQMLLQ KLKSMRSSSK KESIDDESQQ  60
AKAQEQSRRK KTSRAQDSIL MYMVKIMEVC GGQGFVFGIV PEKGKLVTGS SDSLRGWWRE  120
KVKFEKNAPI AIAECLPGLL VQQQENDILD PSSSYMHLLE ELQDATLGSL LSALMQHCIP  180
PQRTFPLERG LSPPWWPTGK ELWWRDQGLL ALEQGPPPYR KPHDLNKAWK VSVLAAVIKH  240
MSPDLGRMRR LVIKSKSLQN KMTAKETSTW CKVVNQEQAL LELTQRALKI SEKEDDKEDN  300
LAFDGSTSTL RRNDMKRKSN FEHRAMNMEQ DVFYACQNLN CAQSGLGLGF VDKNSRIEHE  360
ISCSHRDDQQ RLNLSINSTT FSSLINEAQL KPHEESIFGR EGEIIFQQDL MNNMEVERSS  420
VNCHTQISDA VLENLKNFWG DNNVVLEQLD YDLTTNGNMN SNGTPSQDVD LNHDAATCIW  480
DLAYDDRFKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A7e-551542801126Protein ETHYLENE INSENSITIVE 3
4zds_B7e-551542801126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780539.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein isoform X1
RefseqXP_009780540.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein isoform X2
SwissprotQ9LX161e-126EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A1U7X0Z00.0A0A1U7X0Z0_NICSY; putative ETHYLENE INSENSITIVE 3-like 4 protein isoform X1
TrEMBLA0A1U7X2500.0A0A1U7X250_NICSY; putative ETHYLENE INSENSITIVE 3-like 4 protein isoform X2
STRINGXP_009780539.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-126EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]