PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009780511.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 146aa MW: 16504.3 Da PI: 9.3101 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2e-20 | 16 | 67 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ r r +lg+f+taeeAa+a+++a+ +l+g+ XP_009780511.1 16 KYRGVRRRP-WGKFAAEIRDPT----RpgSRQWLGTFDTAEEAARAYDRAAFNLRGH 67 8********.**********96....34599************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.96E-31 | 16 | 75 | No hit | No description |
PROSITE profile | PS51032 | 24.276 | 16 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-14 | 16 | 67 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 16 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-37 | 16 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-24 | 16 | 75 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.4E-11 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MQEKESSNNK GKEEVKYRGV RRRPWGKFAA EIRDPTRPGS RQWLGTFDTA EEAARAYDRA 60 AFNLRGHLAT LNFPNEYYNQ LQYPPLYYRN SISSPTNVAS SPRGSLENGN SSSSTGKAKE 120 IIELECLDNS VLEELLGAED SKVKRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-30 | 11 | 131 | 9 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016441045.1 | 1e-105 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 7e-42 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A1S3XM45 | 1e-103 | A0A1S3XM45_TOBAC; ethylene-responsive transcription factor ERF098-like | ||||
STRING | XP_009780511.1 | 1e-104 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 5e-31 | ERF family protein |
Publications ? help Back to Top | |||
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