PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009780503.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 178aa MW: 19923.6 Da PI: 9.2414 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.8 | 9.6e-17 | 31 | 79 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g XP_009780503.1 31 FKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 79 8****999.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.03E-20 | 30 | 88 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.549 | 30 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-29 | 30 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.00E-26 | 30 | 89 | No hit | No description |
SMART | SM00380 | 2.0E-36 | 30 | 93 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-10 | 31 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 69 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MEVDGGRSGG AAVVGGEGWC CPGKIKKERI FKGIRMRKWG KWVAEIREPN KRSRIWLGSY 60 STPVAAARAY DTAVYYLRGP SARLNFPELL VGDGGLSDLS AASIRKKAVE VGARVDAIQN 120 SLAIHKHHGH HHDQQRPRES RNHCCENGSP AQLKPCWFQE KPDLNVKPEP EDPELEYW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-14 | 31 | 94 | 15 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780503.1 | 1e-130 | PREDICTED: ethylene-responsive transcription factor ERF011-like | ||||
Refseq | XP_016462719.1 | 1e-130 | PREDICTED: ethylene-responsive transcription factor ERF011-like | ||||
Swissprot | Q9FH94 | 3e-50 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A1S3ZEE0 | 1e-129 | A0A1S3ZEE0_TOBAC; ethylene-responsive transcription factor ERF011-like | ||||
TrEMBL | A0A1U7WPL0 | 1e-129 | A0A1U7WPL0_NICSY; ethylene-responsive transcription factor ERF011-like | ||||
STRING | XP_009780503.1 | 1e-130 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67190.1 | 4e-45 | DREB and EAR motif protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|