PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009780447.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 269aa    MW: 30631.6 Da    PI: 8.6962
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009780447.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.67e-55151421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLkkkv++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g+r+nra++sgyWkatg dk++++ 
  XP_009780447.1  15 LPPGFRFHPTDEELVVHYLKKKVASAPLPV-KIIAEVDLYKFDPWELPSKANFGEQEWYFFSPRDRKYPNGTRPNRAATSGYWKATGIDKPIYTC 108
                     79****************************.89***************99999****************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++++g+kktLvfy+g+ pkg k++Wvmheyrl
  XP_009780447.1 109 gGTKKIGVKKTLVFYRGKPPKGIKSNWVMHEYRL 142
                     67788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-6611169IPR003441NAC domain
PROSITE profilePS5100563.3315168IPR003441NAC domain
PfamPF023657.9E-2916142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MESTGLMSGS SHLQLPPGFR FHPTDEELVV HYLKKKVASA PLPVKIIAEV DLYKFDPWEL  60
PSKANFGEQE WYFFSPRDRK YPNGTRPNRA ATSGYWKATG IDKPIYTCGG TKKIGVKKTL  120
VFYRGKPPKG IKSNWVMHEY RLVDNNSSLT KKCSLRLDDW VLCRIYKKNS SSTIMEMDKE  180
DSIEETTGST SILPASSMNY FEQNSSIGTL RVGSNFDEFF ENDIKMAKNE YENGDDTPLM  240
EGNSSSFLTM LNQISPRSSQ LNSWFSGYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-741117213169NO APICAL MERISTEM PROTEIN
1ut4_B2e-741117213169NO APICAL MERISTEM PROTEIN
1ut7_A2e-741117213169NO APICAL MERISTEM PROTEIN
1ut7_B2e-741117213169NO APICAL MERISTEM PROTEIN
4dul_A2e-741117213169NAC domain-containing protein 19
4dul_B2e-741117213169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780447.10.0PREDICTED: NAC transcription factor 25-like
RefseqXP_016488493.10.0PREDICTED: NAC transcription factor 25-like
SwissprotA2YMR03e-94NAC10_ORYSI; NAC transcription factor ONAC010
SwissprotQ8GY422e-94NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A1S4BHZ50.0A0A1S4BHZ5_TOBAC; NAC transcription factor 25-like
TrEMBLA0A1U7WKF90.0A0A1U7WKF9_NICSY; NAC transcription factor 25-like
STRINGXP_009780447.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.18e-97NAC domain containing protein 25