PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009780429.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 255aa MW: 29020.6 Da PI: 6.995 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.5 | 3.7e-30 | 127 | 186 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv+rs e+p+v++ tYegeHnh+ XP_009780429.1 127 VKDGYHWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQRSVENPSVLVATYEGEHNHP 186 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.3E-29 | 120 | 188 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.749 | 122 | 188 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-26 | 124 | 188 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.3E-34 | 127 | 187 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-24 | 128 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDTSSRDKSF AIDLNTNPPP QNINSIPHEM MDEELIRMKE ENKKLTTMLT TLCENYNYLQ 60 THLIELLQKH NSEEENSKLL SRKRKAEDDH YCCANSEEVS PKRPREIRTN VSTVCVKTTP 120 SDQSAVVKDG YHWRKYGQKV TRDNPSPRAY YKCSFAPSCP VKKKVQRSVE NPSVLVATYE 180 GEHNHPLPSQ AQVTAPLINH NVTTNPTFLN KFMEDIDTTS LQQDLVAQMA HSLTRNPNFT 240 AAVAAAISGN FFEYD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-21 | 126 | 189 | 16 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 7e-21 | 126 | 189 | 16 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB024510 | 0.0 | AB024510.1 Nicotiana tabacum mRNA, complete cds, 1346 bp sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780429.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
Refseq | XP_016491237.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 2e-67 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A1S4BQS0 | 0.0 | A0A1S4BQS0_TOBAC; probable WRKY transcription factor 40 | ||||
TrEMBL | A0A1U7X0M6 | 0.0 | A0A1U7X0M6_NICSY; probable WRKY transcription factor 40 | ||||
STRING | XP_009780429.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4500 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 8e-70 | WRKY DNA-binding protein 40 |