PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009780426.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 254aa MW: 29304.4 Da PI: 10.4338 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.3 | 9.9e-12 | 166 | 236 | 16 | 88 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS.S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr.s 88 +++p +fa+ g++k + ++tl + +g++W+v + + + r+++++GW F +n++ g+++ Fkl++ + XP_009780426.1 166 VTIPMTFARWSGIIKMK--KITLINGEGKKWKVDI--EHIGPRVLIKGGWAAFRTQNKIAaNGETCRFKLIQGrR 236 69******999999655..8***************..999999****************989*******996424 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.16E-6 | 5 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-6 | 6 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.824 | 22 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.6E-13 | 148 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-13 | 148 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.784 | 151 | 252 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0031 | 154 | 242 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-9 | 166 | 234 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MLVDPDKYPS FCKLLFRQGF MDKILMPPVF IKENKKKLAK TCLLKTDIAA GMSWEAKIVK 60 ENSHFFICDG EWPKFVAHHK LKRQLFEELS SSSEEEEECD VGIRLSRKSK KVKTEPKELP 120 GVAEEEEAQN RSKENGPKTL RYSVVNLKNK NPYYEMAVRK THSLFVTIPM TFARWSGIIK 180 MKKITLINGE GKKWKVDIEH IGPRVLIKGG WAAFRTQNKI AANGETCRFK LIQGRRRGRG 240 RSCYVLQVEK ISKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780426.1 | 0.0 | PREDICTED: uncharacterized protein LOC104229470 isoform X2 | ||||
TrEMBL | A0A1U7WSZ1 | 0.0 | A0A1U7WSZ1_NICSY; uncharacterized protein LOC104229470 isoform X2 | ||||
STRING | XP_009780425.1 | 1e-164 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31680.1 | 4e-10 | B3 family protein |