PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009779881.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 307aa    MW: 35014.4 Da    PI: 7.378
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009779881.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.25.3e-5651311129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL++kv++ ++++ ++i++vd++k+ePwdLp+k++ +ekewyf+s +d+ky+tg r+nrat++gyWk+tgkdke+++ 
  XP_009779881.1   5 LPPGFRFHPTDEELITFYLTNKVSDFSFNA-RAIADVDLNKCEPWDLPAKASMGEKEWYFYSLKDRKYPTGLRTNRATEAGYWKTTGKDKEIFR- 97 
                     79**************************99.89***************999999****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +g lvg+kktLvfykgrapkgekt+Wvmheyrle
  XP_009779881.1  98 GGVLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 131
                     ********************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-643151IPR003441NAC domain
PROSITE profilePS5100559.2075151IPR003441NAC domain
PfamPF023651.2E-276130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEEKLPPGFR FHPTDEELIT FYLTNKVSDF SFNARAIADV DLNKCEPWDL PAKASMGEKE  60
WYFYSLKDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGGV LVGMKKTLVF YKGRAPKGEK  120
TNWVMHEYRL ETRLGFKPSK EEWVVCRVFQ KSSTMKKPQP TSSSPQSLES PNCDTNTIIT  180
NELGDIELPI NFNCLANSSN GMISNNISLH NYNNENMNMN LASSLLNSSN LSSVNSLLFR  240
ALQLRGYQPR EATTTTQDYS FMPPIQGNDF SFNFTNIGGP SSSMVFDNSV QQQETQEQPY  300
KLDSNIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-57515717171NO APICAL MERISTEM PROTEIN
1ut4_B6e-57515717171NO APICAL MERISTEM PROTEIN
1ut7_A6e-57515717171NO APICAL MERISTEM PROTEIN
1ut7_B6e-57515717171NO APICAL MERISTEM PROTEIN
4dul_A6e-57515717171NAC domain-containing protein 19
4dul_B6e-57515717171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT5982211e-168KT598221.1 Solanum tuberosum cultivar Desiree NAC103 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779881.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ23e-82NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1U7WRF00.0A0A1U7WRF0_NICSY; NAC domain-containing protein 100-like
STRINGXP_009779881.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.14e-96NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]