PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009779881.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 307aa MW: 35014.4 Da PI: 7.378 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.2 | 5.3e-56 | 5 | 131 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv++ ++++ ++i++vd++k+ePwdLp+k++ +ekewyf+s +d+ky+tg r+nrat++gyWk+tgkdke+++ XP_009779881.1 5 LPPGFRFHPTDEELITFYLTNKVSDFSFNA-RAIADVDLNKCEPWDLPAKASMGEKEWYFYSLKDRKYPTGLRTNRATEAGYWKTTGKDKEIFR- 97 79**************************99.89***************999999****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +g lvg+kktLvfykgrapkgekt+Wvmheyrle XP_009779881.1 98 GGVLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 131 ********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-64 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.207 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MEEKLPPGFR FHPTDEELIT FYLTNKVSDF SFNARAIADV DLNKCEPWDL PAKASMGEKE 60 WYFYSLKDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGGV LVGMKKTLVF YKGRAPKGEK 120 TNWVMHEYRL ETRLGFKPSK EEWVVCRVFQ KSSTMKKPQP TSSSPQSLES PNCDTNTIIT 180 NELGDIELPI NFNCLANSSN GMISNNISLH NYNNENMNMN LASSLLNSSN LSSVNSLLFR 240 ALQLRGYQPR EATTTTQDYS FMPPIQGNDF SFNFTNIGGP SSSMVFDNSV QQQETQEQPY 300 KLDSNIW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-57 | 5 | 157 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-57 | 5 | 157 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-57 | 5 | 157 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-57 | 5 | 157 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-57 | 5 | 157 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-57 | 5 | 157 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT598221 | 1e-168 | KT598221.1 Solanum tuberosum cultivar Desiree NAC103 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009779881.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 3e-82 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1U7WRF0 | 0.0 | A0A1U7WRF0_NICSY; NAC domain-containing protein 100-like | ||||
STRING | XP_009779881.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 4e-96 | NAC domain containing protein 58 |
Publications ? help Back to Top | |||
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