PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009779881.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 307aa MW: 35014.4 Da PI: 7.378

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009779881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.2	5.3e-56	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv++ ++++ ++i++vd++k+ePwdLp+k++ +ekewyf+s +d+ky+tg r+nrat++gyWk+tgkdke+++ XP_009779881.1 5 LPPGFRFHPTDEELITFYLTNKVSDFSFNA-RAIADVDLNKCEPWDLPAKASMGEKEWYFYSLKDRKYPTGLRTNRATEAGYWKTTGKDKEIFR- 97 79************************99.89***********999999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +g lvg+kktLvfykgrapkgekt+Wvmheyrle XP_009779881.1 98 GGVLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 131 ******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.76E-64	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	59.207	5	151	IPR003441	NAC domain
Pfam	PF02365	1.2E-27	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MEEKLPPGFR FHPTDEELIT FYLTNKVSDF SFNARAIADV DLNKCEPWDL PAKASMGEKE 60 WYFYSLKDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGGV LVGMKKTLVF YKGRAPKGEK 120 TNWVMHEYRL ETRLGFKPSK EEWVVCRVFQ KSSTMKKPQP TSSSPQSLES PNCDTNTIIT 180 NELGDIELPI NFNCLANSSN GMISNNISLH NYNNENMNMN LASSLLNSSN LSSVNSLLFR 240 ALQLRGYQPR EATTTTQDYS FMPPIQGNDF SFNFTNIGGP SSSMVFDNSV QQQETQEQPY 300 KLDSNIW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-57	5	157	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-57	5	157	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-57	5	157	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-57	5	157	17	171	NO APICAL MERISTEM PROTEIN
4dul_A	6e-57	5	157	17	171	NAC domain-containing protein 19
4dul_B	6e-57	5	157	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT598221	1e-168	KT598221.1 Solanum tuberosum cultivar Desiree NAC103 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009779881.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	3e-82	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1U7WRF0	0.0	A0A1U7WRF0_NICSY; NAC domain-containing protein 100-like
STRING	XP_009779881.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	4e-96	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]