PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009779841.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 567aa MW: 62264.4 Da PI: 4.9425 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 453.8 | 1.1e-138 | 186 | 558 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv++L++cAeav++++l+ a al+ ++ la ++ +m+++a+yf+eALa+r+++ + p+++ e++ +++l++ f+e++P+lkf+h XP_009779841.1 186 LVHTLMACAEAVQQENLNVAYALVRHIGILAVSQSGAMRKVATYFAEALARRIYK--------IYPQDSIESSYTDVLQM--HFYETCPYLKFAH 270 689****************************************************........44666654445555544..4************ PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +taNqaIlea+ ++++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+fef+ +v+++l+dl+ XP_009779841.1 271 FTANQAILEAFTNCNKVHVIDFSLKQGMQWPALIQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVTNSLADLD 365 *********************************************************************************************** PP GRAS 191 leeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres... 279 e L++++ E++aVn+v++lhrll++++++e+ vL+ +k+++Pk+v++veqea+hn++ Fl+rf eal+yys++fdsle+++++ s XP_009779841.1 366 AEILDLRSsteTEVVAVNSVFELHRLLARPGAVEK----VLNSIKQMNPKIVTIVEQEANHNASVFLDRFNEALHYYSTMFDSLESSVSTSStgl 456 ****99988899***********************....************************************************66666666 PP GRAS 280 ......eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367 +++ ++++++lgr+i+nvvaceg +r+erhetl++Wr r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL XP_009779841.1 457 tqpivnNQDLVMSEVYLGRQICNVVACEGVDRVERHETLSQWRVRMNSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPL 551 6666669**************************************************************************************** PP GRAS 368 vsvSaWr 374 +++SaWr XP_009779841.1 552 IATSAWR 558 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01129 | 6.1E-33 | 32 | 105 | No hit | No description |
Pfam | PF12041 | 9.5E-34 | 32 | 98 | IPR021914 | Transcriptional factor DELLA, N-terminal |
PROSITE profile | PS50985 | 67.759 | 160 | 537 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-136 | 186 | 558 | IPR005202 | Transcription factor GRAS |
Gene3D | G3DSA:1.20.5.440 | 5.6E-4 | 191 | 214 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MKRDRDREKS QDGSSSSKSK FFEEEQPDAG MDELLAVLGY KVKSSDLAEV AQQLEQLEMA 60 MCTTLGDGIS HLSTDTVHKN PSDLSGWVQS MLSELNNTSI PSNFDMIGSI GEKDLCVSPG 120 GGASSNSITI NEQNRIISDD DLRAIPGGAV FATESNKRQR SCVPLTADAT TRPVVLVDSQ 180 ETGVRLVHTL MACAEAVQQE NLNVAYALVR HIGILAVSQS GAMRKVATYF AEALARRIYK 240 IYPQDSIESS YTDVLQMHFY ETCPYLKFAH FTANQAILEA FTNCNKVHVI DFSLKQGMQW 300 PALIQALALR PGGPPAFRLT GIGPPQPDNT DALQQVGWKL AQLAETIGVE FEFRGFVTNS 360 LADLDAEILD LRSSTETEVV AVNSVFELHR LLARPGAVEK VLNSIKQMNP KIVTIVEQEA 420 NHNASVFLDR FNEALHYYST MFDSLESSVS TSSTGLTQPI VNNQDLVMSE VYLGRQICNV 480 VACEGVDRVE RHETLSQWRV RMNSAGFDPV HLGSNAFKQA SMLLALFAGG DGYRVEENDG 540 CLMLGWHTRP LIATSAWRLK AAGDTKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-67 | 181 | 557 | 14 | 378 | Protein SCARECROW |
5b3h_A | 4e-67 | 181 | 557 | 13 | 377 | Protein SCARECROW |
5b3h_D | 4e-67 | 181 | 557 | 13 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR082148 | 0.0 | KR082148.1 Nicotiana benthamiana GAI1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009779840.1 | 0.0 | PREDICTED: DELLA protein GAI-like isoform X1 | ||||
Refseq | XP_009779841.1 | 0.0 | PREDICTED: DELLA protein GAI-like isoform X2 | ||||
Swissprot | Q7Y1B6 | 0.0 | GAI_SOLLC; DELLA protein GAI | ||||
TrEMBL | A0A1U7X046 | 0.0 | A0A1U7X046_NICSY; DELLA protein GAI-like isoform X1 | ||||
STRING | XP_009796771.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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