PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009779682.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 314aa    MW: 35688.7 Da    PI: 7.5987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009779682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.7e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l++ + ++G+g +W + +++ g++R++k+c++rw++yl
   XP_009779682.1 14 RGPWSPEEDAKLKEFIDKYGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding36.31.3e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd  +  + +  G++ W+ Ia+ ++ gRt++++k++w++
   XP_009779682.1  69 GDFSDEEDRVICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.119962IPR017930Myb domain
SuperFamilySSF466894.9E-2711109IPR009057Homeodomain-like
SMARTSM007176.1E-121364IPR001005SANT/Myb domain
PfamPF002495.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231569IPR009057Homeodomain-like
CDDcd001676.82E-91662No hitNo description
PROSITE profilePS5129422.27863117IPR017930Myb domain
SMARTSM007177.3E-1167115IPR001005SANT/Myb domain
PfamPF002492.9E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2370117IPR009057Homeodomain-like
CDDcd001671.59E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKEFID KYGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGD FSDEEDRVIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKVMGL  120
KSPFFPPTQT QTFSSLFRDS YYTTTRSLTG GLEHISSAQP NLIMCTSNNM NFNFELGTNQ  180
YSYFQPCQDQ SLMNPMQATC SSSDGSCNQM SYGKDIKQEE MGSCLQSHIP TTFEETTQKF  240
TLDYGNNIGR GNDHQLGTWA DQKSNGYQSS QFQYYDIEEV KELISSSSSG NGCNNNSFFF  300
YNDENKTNER GMHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754457e-41HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755187e-41HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779682.10.0PREDICTED: transcription factor RAX2-like
RefseqXP_016485357.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A1S4B9390.0A0A1S4B939_TOBAC; transcription factor RAX2-like
TrEMBLA0A1U7WIB20.0A0A1U7WIB2_NICSY; transcription factor RAX2-like
STRINGXP_009779682.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-79myb domain protein 36