PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009779378.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 296aa MW: 33846.9 Da PI: 5.3865 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158 | 3.9e-49 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF P+deel+++yL kk++++++ ++ evd++ +ePw+Lp+ +k +++ewyfFs rd+kyatg r+nrat sgyWkatgkd++vl+ XP_009779378.1 10 LPPGFRFFPSDEELICDYLYKKIANQEVIK-GTLVEVDLHICEPWQLPEVAKLNSSEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRTVLDP 103 79************************9555.78***************87788899*************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129 +g l+g++ktLvfyk+rap+g kt W+mhe+rle XP_009779378.1 104 rTGGLIGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 138 78889***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-60 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.758 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-26 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGLRDIGASL PPGFRFFPSD EELICDYLYK KIANQEVIKG TLVEVDLHIC EPWQLPEVAK 60 LNSSEWYFFS FRDRKYATGF RTNRATISGY WKATGKDRTV LDPRTGGLIG MRKTLVFYKN 120 RAPNGIKTGW IMHEFRLENP HIPPKEDWVL CRVFHKGTKD DMNNNSNNIL SPENMYEASV 180 TSPEFVVSPL NNMDNHGSTM PKLLHYGDDD GYYTSTANFS SNSAHQNQNS SNLQLSQEIN 240 KVLANEMVHS KCGKEDEFGF LYDMNFEEYS SLQDGGVHNS CIGDMRFEDE NSLVFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-46 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-46 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-46 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-46 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-46 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-46 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 2e-74 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009779378.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 5e-67 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A1U7WLD2 | 0.0 | A0A1U7WLD2_NICSY; NAC domain-containing protein 21/22-like | ||||
STRING | XP_009779378.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1882 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 8e-92 | NAC domain containing protein 74 |