PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009779143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 372aa MW: 41988.8 Da PI: 5.8728 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.2 | 1.3e-11 | 87 | 125 | 4 | 41 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLeae 41 +k+ rr+++NReAAr+sR+RKka++++Le+ k k L+ e XP_009779143.1 87 DKVLRRLAQNREAARKSRLRKKAYVQQLENsKLKLLQLE 125 7999*************************8344444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.6E-5 | 84 | 144 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.726 | 86 | 130 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.3E-8 | 87 | 123 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.47E-7 | 88 | 130 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.4E-7 | 90 | 133 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 91 | 106 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 6.1E-28 | 175 | 249 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MNSTYTQFVA SKRMGICDPI HQIGMWGDFK SSSFPDTSAT LILEVENCLE NEMPIMEKRL 60 HNETEELSHG TVGTSNRYEP EARKPIDKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK 120 LLQLEQELER TRQQGQYAGG GLDESQIGYT GTANSGIAAF EMEYGHWVEE QDRQTDELRS 180 ALNSQVGEIE LHLLVEGCLN HYFDLFRMKA TAAHADVLFL MTGTWKTSAE RFFLWIAGFR 240 PSELLKVLTP NVEPLTEQQL REVCNLTQSC QQAEDALSQG MVKLHQILAE AVAAGTLGEG 300 IILPQMAATI EKLEALVRFV NQADHLRRET LLQMSCILTP QQSAQGLLAL GEYFKRLRAL 360 SSLWTSRTSE PA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ808740 | 0.0 | KJ808740.1 Nicotiana tabacum leucine-zipper transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009779143.1 | 0.0 | PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like | ||||
Refseq | XP_009779144.1 | 0.0 | PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like | ||||
Refseq | XP_016510412.1 | 0.0 | PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like | ||||
Refseq | XP_016510413.1 | 0.0 | PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like | ||||
Swissprot | P14232 | 0.0 | TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A | ||||
TrEMBL | A0A1S4DAL7 | 0.0 | A0A1S4DAL7_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A-like | ||||
TrEMBL | A0A1U7WKQ1 | 0.0 | A0A1U7WKQ1_NICSY; TGACG-sequence-specific DNA-binding protein TGA-1A-like | ||||
STRING | XP_009779143.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA780 | 24 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 1e-146 | bZIP family protein |
Publications ? help Back to Top | |||
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