PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009779112.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 424aa    MW: 46478.7 Da    PI: 6.0195
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009779112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.91e-39542042135
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssaseceaesssssasnsssg....... 88 
                      g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk++eWLl++a p+i el+ + ++++a++ ++e++ss++ +++ +       
  XP_009779112.1  54 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKAVEWLLKAAAPSIAELPPLeGFPDAQQLSDEKRSSAGVEPGFDsadvemd 148
                     689*************************************************************8555554443333333333222224445556 PP

             TCP  89 ........kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                             ++++++++s++s++s+ s l+l++ esr kar+ra+er  ek + k++
  XP_009779112.1 149 dddpnyhqQQQQQQPCSSNSETSKGSGLSLSRsESRIKARERAKERAVEKEKEKEN 204
                     6666666555555569999****************************999998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.2E-4055201IPR005333Transcription factor, TCP
PROSITE profilePS5136931.17556114IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.68181200IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEIEEIQTQD CKFPRISYQD EEDDIGEVKK SSFGDIGKLY GWPSSRIVRV SRASGGKDRH  60
SKVWTSKGLR DRRVRLSVNT AIQFYDLQDR LGCDQPSKAV EWLLKAAAPS IAELPPLEGF  120
PDAQQLSDEK RSSAGVEPGF DSADVEMDDD DPNYHQQQQQ QQPCSSNSET SKGSGLSLSR  180
SESRIKARER AKERAVEKEK EKENESSIVA HHHQNMHHSS SFTELLAGGM NNNNNNSSNN  240
NSNTSPIHQN TARQWSTNPL EYFTSGLLGP SSTRAIDNST GFSGQVYLGN PLQPLIAVSS  300
PMFSISGDHQ PELQHFPFGG NNLAPVVTAN GESNSHSNTS NEYNLNFSIS RGTLQSNSSS  360
TSPSILPHHF QRFSPIDGSQ NLFLGTTMAT AAAAPNAAAL YDAPLQLFYG NGYDHSDQKG  420
KGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2261115155Putative transcription factor PCF6
5zkt_B7e-2261115155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779111.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_009779112.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_016452455.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A1S3YK280.0A0A1S3YK28_TOBAC; transcription factor TCP2-like
TrEMBLA0A1U7WGN20.0A0A1U7WGN2_NICSY; transcription factor TCP2-like
STRINGXP_009779111.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2