PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009779065.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 118aa MW: 13581.2 Da PI: 9.1463 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.7 | 2.2e-07 | 34 | 56 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 W++Ia++++ Rt +++k++w++ XP_009779065.1 34 EWSKIAQYLP-ARTYNEIKNYWRT 56 5*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.8E-7 | 26 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-9 | 32 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.7E-6 | 34 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.65E-5 | 35 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MEKIQGGQIQ THHIGTKEQL ADQLTKSLCK SQHEWSKIAQ YLPARTYNEI KNYWRTRVQK 60 QARKLKTDSN SAAFQVSTHD SPSLDTSASS EDTRLIICFN TELNRYSALQ DFTFNSII |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009779065.1 | 2e-84 | PREDICTED: transcription factor MYB21-like | ||||
TrEMBL | A0A1U7WXV0 | 6e-83 | A0A1U7WXV0_NICSY; transcription factor MYB21-like | ||||
STRING | XP_009779065.1 | 9e-84 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 5e-17 | myb domain protein 62 |