PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009778998.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 347aa    MW: 38957.3 Da    PI: 10.2165
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009778998.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31281338359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  XP_009778998.1 281 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 338
                     9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-17232277IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-33267339IPR003657WRKY domain
PROSITE profilePS5081129.884274340IPR003657WRKY domain
SuperFamilySSF1182904.18E-27277339IPR003657WRKY domain
SMARTSM007749.4E-39279339IPR003657WRKY domain
PfamPF031062.4E-27281338IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEEIEEANRV AVESCHRVVS MLTQQHDQKQ YGNLVRETGE AVHKFKKVVT LLNSNLGHAR  60
VRKAKKILTP FPQNLLLENP TCKTDDHPKA LQLLPVKSPE IPVQEIGSNV KSTLTLGYPL  120
LELSSHNKSS LHLAKQTPSS SFHFAQQQQQ QQRLKYQLQQ QQLKQQADMM YRRSNSGISL  180
NFDSSTCTPT MSSTRSFISS LSIDGSVANL DGNAFHLIGA SRSADQSSFQ QKRRCSGKGE  240
EGIVKCGSSS RCHCSKKRKH RVKRSIKVPA ISNKLADIPP DEYSWRKYGQ KPIKGSPHPR  300
GYYKCSSMRG CPARKHVERC LEEPSMLIVT YEGEHNHPRL PSQSANA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-202753411075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1570626e-60AY157062.1 Lycopersicon esculentum WRKY transcription factor IId-3 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778997.10.0PREDICTED: probable WRKY transcription factor 21
RefseqXP_009778998.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-121WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A1U7WKB80.0A0A1U7WKB8_NICSY; probable WRKY transcription factor 21
STRINGXP_009778997.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.17e-96WRKY DNA-binding protein 21