PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009778880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 199aa MW: 22733.2 Da PI: 4.3696 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.7e-09 | 15 | 37 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Ia+ ++ gRt++++k++w++ XP_009778880.1 15 RWAKIAEQLP-GRTDNEVKNYWRT 37 4*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.437 | 1 | 43 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-10 | 14 | 38 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.58E-7 | 14 | 37 | No hit | No description |
SuperFamily | SSF46689 | 3.43E-7 | 15 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.7E-7 | 15 | 37 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MCIYTTLNIY LLIKRWAKIA EQLPGRTDNE VKNYWRTKVQ KHAKQLHCDV NSLQFRDFLY 60 YQWLPRLTEQ IRSTSSPQEQ LMSSSSSTSH NNSTEVILEN FTFLQAGINE STNITCPINQ 120 STPNVAQVTS LIDDNIWNLS SGNWTSSGFE DEFYDLSSTD MAIYSNSQDQ CHSWASAGSE 180 VLLPDETLGL SDVDLWLFP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009778880.1 | 1e-147 | PREDICTED: transcription factor MYB24-like | ||||
TrEMBL | A0A1U7WXB6 | 1e-145 | A0A1U7WXB6_NICSY; transcription factor MYB24-like | ||||
STRING | XP_009778880.1 | 1e-146 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 1e-26 | myb domain protein 78 |