PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009778774.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 262aa    MW: 29991.4 Da    PI: 8.3158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009778774.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-172471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll++ v+ +G g+W++ a+  g++Rt+k+c++rw++yl
   XP_009778774.1 24 KGPWTIEEDNLLIHHVTSHGEGRWNALAKSSGLKRTGKSCRLRWLNYL 71
                     79********************************************97 PP

2Myb_DNA-binding50.45.3e-1677120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ +++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_009778774.1  77 RGNLSPQEQLLILELHSRWGNR-WSKIAEHLP-GRTDNEIKNYWRT 120
                      7899******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8311971IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-222174IPR009057Homeodomain-like
SuperFamilySSF466891.84E-3021118IPR009057Homeodomain-like
SMARTSM007178.8E-142373IPR001005SANT/Myb domain
PfamPF002491.6E-152471IPR001005SANT/Myb domain
CDDcd001672.98E-102671No hitNo description
PROSITE profilePS5129424.43572126IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-2375125IPR009057Homeodomain-like
SMARTSM007171.4E-1476124IPR001005SANT/Myb domain
PfamPF002493.6E-1577120IPR001005SANT/Myb domain
CDDcd001672.35E-1081120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MRKGRLAKST STNSSSEDAF ELRKGPWTIE EDNLLIHHVT SHGEGRWNAL AKSSGLKRTG  60
KSCRLRWLNY LKPDVKRGNL SPQEQLLILE LHSRWGNRWS KIAEHLPGRT DNEIKNYWRT  120
RVQKQARQLK VDSNSTKFLE AIRGFWIPRL LEKMEQYCPS SSSPTSSSST ITIEKQNSAL  180
HSSLINEQES LQSLNPKPNT CEEISPRFYS PESNSMAENA TGFNGNSVYS NSTQEDCYHL  240
ETSSYFEEQP YFSALESQDI LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-272112624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778774.10.0PREDICTED: transcription factor MYB24-like
RefseqXP_016447836.10.0PREDICTED: transcription factor MYB24-like
SwissprotQ9C9G77e-80MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A1S3Y6J80.0A0A1S3Y6J8_TOBAC; transcription factor MYB24-like
TrEMBLA0A1U7WVR40.0A0A1U7WVR4_NICSY; transcription factor MYB24-like
STRINGXP_009778774.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-81myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]