PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009778771.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 305aa    MW: 35232 Da    PI: 8.8729
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009778771.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.63.6e-51241542128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                      pGfrFhPtdeelv +yL++kve++++++ e ik++diyk++PwdLpk+ + ++kewyfF+kr +ky+++ r+nr+t sg+Wkatg d++++s+ 
  XP_009778771.1  24 LPGFRFHPTDEELVGFYLRRKVEKRPITI-ELIKQIDIYKYDPWDLPKSSNMGDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSTv 117
                     69***************************.89***************988999****************************************98 PP

             NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++e +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  XP_009778771.1 118 gegrRHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 154
                     88766677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-5522185IPR003441NAC domain
PROSITE profilePS5100554.38123185IPR003441NAC domain
PfamPF023651.2E-2525154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEVENLSSIV RISNYTEEEE DVILPGFRFH PTDEELVGFY LRRKVEKRPI TIELIKQIDI  60
YKYDPWDLPK SSNMGDKEWY FFCKRGRKYR NSIRPNRVTG SGFWKATGID RPIYSTVGEG  120
RRHECIGLKK SLVYYRGSAG KGTKTDWMMH EFRLPAENDK STKHIEAKSI AQEAEVWTLC  180
RIFKRNGSYR KCLPEWRSVA AAKRHQIDTS SKTCSADSSD YIISFGAPVM RPHNNIAETR  240
PFSGHVHDIS NNSQLLMGQL SSVRQAPSVS HTLAPDMNEL LKHGDWDELR SFLDLAVDPF  300
FDFVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-512519119171NO APICAL MERISTEM PROTEIN
1ut4_B7e-512519119171NO APICAL MERISTEM PROTEIN
1ut7_A7e-512519119171NO APICAL MERISTEM PROTEIN
1ut7_B7e-512519119171NO APICAL MERISTEM PROTEIN
3swm_A9e-512519122174NAC domain-containing protein 19
3swm_B9e-512519122174NAC domain-containing protein 19
3swm_C9e-512519122174NAC domain-containing protein 19
3swm_D9e-512519122174NAC domain-containing protein 19
3swp_A9e-512519122174NAC domain-containing protein 19
3swp_B9e-512519122174NAC domain-containing protein 19
3swp_C9e-512519122174NAC domain-containing protein 19
3swp_D9e-512519122174NAC domain-containing protein 19
4dul_A7e-512519119171NAC domain-containing protein 19
4dul_B7e-512519119171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778771.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
RefseqXP_016515497.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-89NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1S4DPZ30.0A0A1S4DPZ3_TOBAC; transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A1U7WNA20.0A0A1U7WNA2_NICSY; transcription factor JUNGBRUNNEN 1-like
STRINGXP_009778771.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.15e-92NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]