PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009778423.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 771aa    MW: 85417.2 Da    PI: 5.9676
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009778423.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.33.4e-05543603154
                     TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                     +rkRt ++++q+  +e++   ++ +  ++++ e  Ak+l     ++t++q k+W  Nr+a+
  XP_009778423.1 543 KRKRTIMNEKQISLMEKALMDEPDMqrNKASLEFWAKELsvhgsEVTKSQLKNWLNNRKAR 603
                     79******************977761155678999*******9*****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-5530604IPR009057Homeodomain-like
PROSITE profilePS5007110.981540607IPR001356Homeobox domain
SMARTSM003891.4E-4542611IPR001356Homeobox domain
CDDcd000863.90E-5543606No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MGLLHSTLVA SSLYLLTVCI SSQWHELAQV LLAYYKVDVL IDTAFAAVTA DIKILRRNLS  60
ANHAHSQQEY GLKAEETLNH LCQQCEASLQ FLQSLCQQKS FRERLVKNKE LSSKGGVLLL  120
AQAVMHLDVS PLVTLSSSIV AAVSRLKSKV LSILLNLCEA ESLSYLDEVA STPASLDLAK  180
SIALEVLNLL KKMFRTGFQQ SVAPSDKIYP KGLLQLNAMR LADIFSDDSN FRSFITTHFT  240
EVLTEIFSVA HGEFVSSWCS SDLPIREEDA TLEYDPFAAA GWVLDLFPFS DQSSAAMSIE  300
PTFVPSHVPR LSYPHQRTSL LVKVLANLHC FVPDICKEEK DLFLNKFVHC LRTKVSETPE  360
GFKSISDSQK AATVSRNLGS LLSHAESLIP AFLNEEDVQL LRVFITQLES LITPRACGEN  420
RTQEAQNLGA CLPPQLREVA MDLNNRLNQL NSRINGEGQS GEAGMKAEMT EQDKFIATDI  480
EMKDIEKDTH NVETSGSDSS SSRSRHPTDQ AGKVEKINCN GPGDGREDEM AEASQHEEKQ  540
QRKRKRTIMN EKQISLMEKA LMDEPDMQRN KASLEFWAKE LSVHGSEVTK SQLKNWLNNR  600
KARLARAAKD GRTLSEGDNL DKHCGSLVLP PCDSPGSPVE DVGNLSAARE NVQRVTGPAP  660
STCFTENPAA VSVASTETAK CMAGQYVVLV NDKAEEIGRG KVCQVSGKWY QRDLEELGTC  720
VVDIIDLKVD RSAKLPYPSE LTGTSFDQAE RKFGFMRVLW QSNKLFVLPA R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2144631e-146AC214463.1 Solanum lycopersicum chromosome 9 clone C09HBa0080D01, complete sequence.
GenBankHG9754481e-146HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-146HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462731.10.0PREDICTED: nodulin homeobox-like
RefseqXP_016462732.10.0PREDICTED: nodulin homeobox-like
TrEMBLA0A1S3ZEL80.0A0A1S3ZEL8_TOBAC; nodulin homeobox-like
STRINGXP_009778419.10.0(Nicotiana sylvestris)