PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009778423.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 771aa MW: 85417.2 Da PI: 5.9676

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009778423.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.3	3.4e-05	543	603	1	54
TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt ++++q+ +e++ ++ + ++++ e Ak+l ++t++q k+W Nr+a+ XP_009778423.1 543 KRKRTIMNEKQISLMEKALMDEPDMqrNKASLEFWAKELsvhgsEVTKSQLKNWLNNRKAR 603 79****************977761155678999***9***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-5	530	604	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.981	540	607	IPR001356	Homeobox domain
SMART	SM00389	1.4E-4	542	611	IPR001356	Homeobox domain
CDD	cd00086	3.90E-5	543	606	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0060195	Biological Process	negative regulation of antisense RNA transcription
GO:0005730	Cellular Component	nucleolus
GO:0003697	Molecular Function	single-stranded DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence Send to blast
MGLLHSTLVA SSLYLLTVCI SSQWHELAQV LLAYYKVDVL IDTAFAAVTA DIKILRRNLS 60 ANHAHSQQEY GLKAEETLNH LCQQCEASLQ FLQSLCQQKS FRERLVKNKE LSSKGGVLLL 120 AQAVMHLDVS PLVTLSSSIV AAVSRLKSKV LSILLNLCEA ESLSYLDEVA STPASLDLAK 180 SIALEVLNLL KKMFRTGFQQ SVAPSDKIYP KGLLQLNAMR LADIFSDDSN FRSFITTHFT 240 EVLTEIFSVA HGEFVSSWCS SDLPIREEDA TLEYDPFAAA GWVLDLFPFS DQSSAAMSIE 300 PTFVPSHVPR LSYPHQRTSL LVKVLANLHC FVPDICKEEK DLFLNKFVHC LRTKVSETPE 360 GFKSISDSQK AATVSRNLGS LLSHAESLIP AFLNEEDVQL LRVFITQLES LITPRACGEN 420 RTQEAQNLGA CLPPQLREVA MDLNNRLNQL NSRINGEGQS GEAGMKAEMT EQDKFIATDI 480 EMKDIEKDTH NVETSGSDSS SSRSRHPTDQ AGKVEKINCN GPGDGREDEM AEASQHEEKQ 540 QRKRKRTIMN EKQISLMEKA LMDEPDMQRN KASLEFWAKE LSVHGSEVTK SQLKNWLNNR 600 KARLARAAKD GRTLSEGDNL DKHCGSLVLP PCDSPGSPVE DVGNLSAARE NVQRVTGPAP 660 STCFTENPAA VSVASTETAK CMAGQYVVLV NDKAEEIGRG KVCQVSGKWY QRDLEELGTC 720 VVDIIDLKVD RSAKLPYPSE LTGTSFDQAE RKFGFMRVLW QSNKLFVLPA R

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence Send to blast

MGLLHSTLVA SSLYLLTVCI SSQWHELAQV LLAYYKVDVL IDTAFAAVTA DIKILRRNLS  60
ANHAHSQQEY GLKAEETLNH LCQQCEASLQ FLQSLCQQKS FRERLVKNKE LSSKGGVLLL  120
AQAVMHLDVS PLVTLSSSIV AAVSRLKSKV LSILLNLCEA ESLSYLDEVA STPASLDLAK  180
SIALEVLNLL KKMFRTGFQQ SVAPSDKIYP KGLLQLNAMR LADIFSDDSN FRSFITTHFT  240
EVLTEIFSVA HGEFVSSWCS SDLPIREEDA TLEYDPFAAA GWVLDLFPFS DQSSAAMSIE  300
PTFVPSHVPR LSYPHQRTSL LVKVLANLHC FVPDICKEEK DLFLNKFVHC LRTKVSETPE  360
GFKSISDSQK AATVSRNLGS LLSHAESLIP AFLNEEDVQL LRVFITQLES LITPRACGEN  420
RTQEAQNLGA CLPPQLREVA MDLNNRLNQL NSRINGEGQS GEAGMKAEMT EQDKFIATDI  480
EMKDIEKDTH NVETSGSDSS SSRSRHPTDQ AGKVEKINCN GPGDGREDEM AEASQHEEKQ  540
QRKRKRTIMN EKQISLMEKA LMDEPDMQRN KASLEFWAKE LSVHGSEVTK SQLKNWLNNR  600
KARLARAAKD GRTLSEGDNL DKHCGSLVLP PCDSPGSPVE DVGNLSAARE NVQRVTGPAP  660
STCFTENPAA VSVASTETAK CMAGQYVVLV NDKAEEIGRG KVCQVSGKWY QRDLEELGTC  720
VVDIIDLKVD RSAKLPYPSE LTGTSFDQAE RKFGFMRVLW QSNKLFVLPA R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214463	1e-146	AC214463.1 Solanum lycopersicum chromosome 9 clone C09HBa0080D01, complete sequence.
GenBank	HG975448	1e-146	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	1e-146	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016462731.1	0.0	PREDICTED: nodulin homeobox-like
Refseq	XP_016462732.1	0.0	PREDICTED: nodulin homeobox-like
TrEMBL	A0A1S3ZEL8	0.0	A0A1S3ZEL8_TOBAC; nodulin homeobox-like
STRING	XP_009778419.1	0.0	(Nicotiana sylvestris)