PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009778422.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 844aa MW: 93209.3 Da PI: 5.5642

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009778422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.2	3.8e-05	616	676	1	54
TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt ++++q+ +e++ ++ + ++++ e Ak+l ++t++q k+W Nr+a+ XP_009778422.1 616 KRKRTIMNEKQISLMEKALMDEPDMqrNKASLEFWAKELsvhgsEVTKSQLKNWLNNRKAR 676 79****************977761155678999***9***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-5	603	677	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.981	613	680	IPR001356	Homeobox domain
SMART	SM00389	1.4E-4	615	684	IPR001356	Homeobox domain
CDD	cd00086	2.16E-5	616	679	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0060195	Biological Process	negative regulation of antisense RNA transcription
GO:0005730	Cellular Component	nucleolus
GO:0003697	Molecular Function	single-stranded DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence Send to blast
MKEEGASCST DPVARSIHPA LDLISAVKGL HGLSSQELSR FIREAENNIL QHRPDNGLNI 60 QIDVEKLARY LALHLIAVIL ASEANAGLLK YLLSGFQLLH SLSDLASRNP KIEQILLDDV 120 KVSEQLLDLV FYSLVILCTY SKVSIDMGLL HSTLVASSLY LLTVCISSQW HELAQVLLAY 180 YKELSSKGGV LLLAQAVMHL DVSPLVTLSS SIVAAVSRLK SKVLSILLNL CEAESLSYLD 240 EVASTPASLD LAKSIALEVL NLLKKMFRTG FQQSVAPSDK IYPKGLLQLN AMRLADIFSD 300 DSNFRSFITT HFTEVLTEIF SVAHGEFVSS WCSSDLPIRE EDATLEYDPF AAAGWVLDLF 360 PFSDQSSAAM SIEPTFVPSH VPRLSYPHQR TSLLVKVLAN LHCFVPDICK EEKDLFLNKF 420 VHCLRTKVSE TPEGFKSISD SQKAATVSRN LGSLLSHAES LIPAFLNEED VQLLRVFITQ 480 LESLITPRAC GENRTQEAQN LGACLPPQLR EVAMDLNNRL NQLNSRINGE GQSGEAGMKA 540 EMTEQDKFIA TDIEMKDIEK DTHNVETSGS DSSSSRSRHP TDQAGKVEKI NCNGPGDGRE 600 DEMAEASQHE EKQQRKRKRT IMNEKQISLM EKALMDEPDM QRNKASLEFW AKELSVHGSE 660 VTKSQLKNWL NNRKARLARA AKDGRTLSEG DNLDKHCGSL VLPPCDSPGS PVEDVGNLSA 720 ARENVQRVTG PAPSTCFTEN PAAVSVASTE TAKCMAGQYV VLVNDKAEEI GRGKVCQVSG 780 KWYQRDLEEL GTCVVDIIDL KVDRSAKLPY PSELTGTSFD QAERKFGFMR VLWQSNKLFV 840 LPAR

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence Send to blast

MKEEGASCST DPVARSIHPA LDLISAVKGL HGLSSQELSR FIREAENNIL QHRPDNGLNI  60
QIDVEKLARY LALHLIAVIL ASEANAGLLK YLLSGFQLLH SLSDLASRNP KIEQILLDDV  120
KVSEQLLDLV FYSLVILCTY SKVSIDMGLL HSTLVASSLY LLTVCISSQW HELAQVLLAY  180
YKELSSKGGV LLLAQAVMHL DVSPLVTLSS SIVAAVSRLK SKVLSILLNL CEAESLSYLD  240
EVASTPASLD LAKSIALEVL NLLKKMFRTG FQQSVAPSDK IYPKGLLQLN AMRLADIFSD  300
DSNFRSFITT HFTEVLTEIF SVAHGEFVSS WCSSDLPIRE EDATLEYDPF AAAGWVLDLF  360
PFSDQSSAAM SIEPTFVPSH VPRLSYPHQR TSLLVKVLAN LHCFVPDICK EEKDLFLNKF  420
VHCLRTKVSE TPEGFKSISD SQKAATVSRN LGSLLSHAES LIPAFLNEED VQLLRVFITQ  480
LESLITPRAC GENRTQEAQN LGACLPPQLR EVAMDLNNRL NQLNSRINGE GQSGEAGMKA  540
EMTEQDKFIA TDIEMKDIEK DTHNVETSGS DSSSSRSRHP TDQAGKVEKI NCNGPGDGRE  600
DEMAEASQHE EKQQRKRKRT IMNEKQISLM EKALMDEPDM QRNKASLEFW AKELSVHGSE  660
VTKSQLKNWL NNRKARLARA AKDGRTLSEG DNLDKHCGSL VLPPCDSPGS PVEDVGNLSA  720
ARENVQRVTG PAPSTCFTEN PAAVSVASTE TAKCMAGQYV VLVNDKAEEI GRGKVCQVSG  780
KWYQRDLEEL GTCVVDIIDL KVDRSAKLPY PSELTGTSFD QAERKFGFMR VLWQSNKLFV  840
LPAR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214463	1e-146	AC214463.1 Solanum lycopersicum chromosome 9 clone C09HBa0080D01, complete sequence.
GenBank	HG975448	1e-146	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	1e-146	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778422.1	0.0	PREDICTED: uncharacterized protein LOC104227794 isoform X2
TrEMBL	A0A1U7WEM8	0.0	A0A1U7WEM8_NICSY; uncharacterized protein LOC104227794 isoform X2
STRING	XP_009778419.1	0.0	(Nicotiana sylvestris)