PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009778421.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 917aa    MW: 101505 Da    PI: 5.8909
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009778421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox154.2e-05689749154
                     TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                     +rkRt ++++q+  +e++   ++ +  ++++ e  Ak+l     ++t++q k+W  Nr+a+
  XP_009778421.1 689 KRKRTIMNEKQISLMEKALMDEPDMqrNKASLEFWAKELsvhgsEVTKSQLKNWLNNRKAR 749
                     79******************977761155678999*******9*****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-5676750IPR009057Homeodomain-like
PROSITE profilePS5007110.981686753IPR001356Homeobox domain
SMARTSM003891.4E-4688757IPR001356Homeobox domain
CDDcd000863.52E-5689752No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MKEEGASCST DPVARSIHPA LDLISAVKGL HGLSSQELSR FIREAENNIL QHRPDNGLNI  60
QIDVEKLARY LALHLIAVIL ASEANAGLLK YLLSGFQLLH SLSDLASRNP KIEQILLDDV  120
KVSEQLLDLV FYSLVILCTY SKVSIDMGLL HSTLVASSLY LLTVCISSQW HELAQVLLAY  180
YKVDVLIDTA FAAVTADIKI LRRNLSANHA HSQQEYGLKA EETLNHLCQQ CEASLQFLQS  240
LCQQKSFRER LVKNKELSSK GGVLLLAQAV MHLDVSPLVT LSSSIVAAVS RLKSKVLSIL  300
LNLCEAESLS YLDEVASTPA SLDLAKSIAL EVLNLLKKMF RTGFQQSVAP SDKIYPKGLL  360
QLNAMRLADI FSDDSNFRSF ITTHFTEVLT EIFSVAHGEF VSSWCSSDLP IREEDATLEY  420
DPFAAAGWVL DLFPFSDQSS AAMSIEPTFV PSHVPRLSYP HQRTSLLVKV LANLHCFVPD  480
ICKEEKDLFL NKFVHCLRTK VSETPEGFKS ISDSQKAATV SRNLGSLLSH AESLIPAFLN  540
EEDVQLLRVF ITQLESLITP RACGENRTQE AQNLGACLPP QLREVAMDLN NRLNQLNSRI  600
NGEGQSGEAG MKAEMTEQDK FIATDIEMKD IEKDTHNVET SGSDSSSSRS RHPTDQAGKV  660
EKINCNGPGD GREDEMAEAS QHEEKQQRKR KRTIMNEKQI SLMEKALMDE PDMQRNKASL  720
EFWAKELSVH GSEVTKSQLK NWLNNRKARL ARAAKDGRTL SEGDNLDKHC GSLVLPPCDS  780
PGSPVEDVGN LSAARENVQR VTGPAPSTCF TENPAAVSVA STETAKCMAG QYVVLVNDKA  840
EEIGRGKVCQ VSGKWYQRDL EELGTCVVDI IDLKVDRSAK LPYPSELTGT SFDQAERKFG  900
FMRVLWQSNK LFVLPAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2144631e-146AC214463.1 Solanum lycopersicum chromosome 9 clone C09HBa0080D01, complete sequence.
GenBankHG9754481e-146HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-146HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778419.10.0PREDICTED: uncharacterized protein LOC104227794 isoform X1
RefseqXP_009778421.10.0PREDICTED: uncharacterized protein LOC104227794 isoform X1
TrEMBLA0A1U7WUQ00.0A0A1U7WUQ0_NICSY; uncharacterized protein LOC104227794 isoform X1
STRINGXP_009778419.10.0(Nicotiana sylvestris)