PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009778379.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 372aa    MW: 41725.1 Da    PI: 6.5316
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009778379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.33.1e-28195251459
                     SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   4 gynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++WrKYGqK++kgs fpr+YYrC+++ +C ++k++e+s +dp+++++ Y+geHnh+
  XP_009778379.1 195 TWAWRKYGQKPIKGSLFPRNYYRCSTSkDCDARKHIEKSPRDPNLFIVAYSGEHNHP 251
                     699*********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-28178253IPR003657WRKY domain
PROSITE profilePS5081129.976187253IPR003657WRKY domain
SuperFamilySSF1182901.57E-23188253IPR003657WRKY domain
SMARTSM007742.5E-30191252IPR003657WRKY domain
PfamPF031067.9E-23196251IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGDNNWDLGA VVRSYNIRPS HDTNKVEVPS LGLESLTFEK DDDWNFFHSL LDDDRDDDIM  60
TFEGLTDIFS RDEQKPDAPQ PSFISVPIAD EVKNDQNDQQ LLLQPIQLPA QQTQPIPPPP  120
PPLAAAAVAA ARVPAAALQK VIPQQLNPRP VLKRAKVRPT IAVPIRNPII QIRRRKNQPE  180
KTVHEVSQEE LIDFTWAWRK YGQKPIKGSL FPRNYYRCST SKDCDARKHI EKSPRDPNLF  240
IVAYSGEHNH PPPANRCTLS DSTNSKPKSK KLPKGINIVP RRSLSFNPSS SNDSGSSPIS  300
PNTPPVFDIE SATPNKNEMV VEEKKADNEE EEEKVILIPN NFMTEDIIKS FEELNGITTP  360
AAPKFAAKGR IL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-17183254878Probable WRKY transcription factor 4
2lex_A5e-17183254878Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778379.10.0PREDICTED: probable WRKY transcription factor 27
RefseqXP_016506104.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A1S4CYM60.0A0A1S4CYM6_TOBAC; probable WRKY transcription factor 27
TrEMBLA0A1U7WUK40.0A0A1U7WUK4_NICSY; probable WRKY transcription factor 27
STRINGXP_009778379.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-31WRKY DNA-binding protein 27