PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009778313.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 240aa MW: 26500.2 Da PI: 8.8129

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009778313.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.8	4.1e-13	56	102	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN f++Lr l+P++ K++Ka+ L +++ +k+L XP_009778313.1 56 KSHSEAERRRRERINAHFATLRNLVPSS-----DKMDKAALLAQVICQVKQL 102 58***********************8.....7**********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.161	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-13	55	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-10	56	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-14	57	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-12	59	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	6.5E-5	141	184	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MNCQISGNLG GFYENEAKVV SQNLVLDSEK GELVKASGRV GKKVGKSEGK RIAALKSHSE 60 AERRRRERIN AHFATLRNLV PSSDKMDKAA LLAQVICQVK QLKETATHVS ESFFIPLDSD 120 EIRVETIAEN AGDGTCLFRA SICCEYRPEL LSDLREVINS LRVNLVKSEI STLGSRVKNI 180 FVFTNVIDGG HANIEAREIL LTSARQAFSS VLGKVAAFPE YSTYSNKRQR ISCFDTSSLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	66	ERRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778313.1	1e-176	PREDICTED: transcription factor bHLH30-like
Refseq	XP_016490519.1	1e-176	PREDICTED: transcription factor bHLH30-like
TrEMBL	A0A1S4BNT8	1e-174	A0A1S4BNT8_TOBAC; transcription factor bHLH30-like
TrEMBL	A0A1U7WI36	1e-174	A0A1U7WI36_NICSY; transcription factor bHLH30-like
STRING	XP_009778313.1	1e-175	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6730	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-34	bHLH family protein