PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009778213.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 767aa    MW: 85842.9 Da    PI: 6.4651
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009778213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.8e-21105160156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  XP_009778213.1 105 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 160
                     7999************************************************9877 PP
2START218.42.4e-682795043206
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      ++a++e+ k+a+++ep+W +s     e++n+de++++f++++         + +ea+r+ g+v+m+l++lv++++d++ qW+e+++    ka+t
  XP_009778213.1 279 VNQAMEEVKKMATSGEPLWIRSFetgrEILNYDEYMKEFPTENPrddgrpnkRCIEASREMGIVFMQLPRLVQTFMDVN-QWKEMFPsmisKAAT 372
                     57899*****************99***************99999*******999*************************.*************** PP

                     EEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
           START  82 levissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                     ++vi++g       ga+qlm+ae q+l+p+v  R+++fvRy++ql+ g+w+ivdvSvd  +++  ++s+v++++lpSg+ +++ sn h+kvtwve
  XP_009778213.1 373 VDVICNGegancwdGAVQLMFAEVQMLTPVVGtREVYFVRYCKQLSVGQWAIVDVSVDKVEDNI-DASLVKCRKLPSGCFLQEQSNAHCKVTWVE 466
                     **************************************************************98.9***************************** PP

                     -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     h +++++++ +l+r++v+sgla+ga++w+atlq+qce+
  XP_009778213.1 467 HLECQKSTVNSLYRVIVNSGLAFGARRWMATLQQQCER 504
                     ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-2388156IPR009057Homeodomain-like
SuperFamilySSF466898.36E-2192163IPR009057Homeodomain-like
PROSITE profilePS5007118.091102162IPR001356Homeobox domain
SMARTSM003893.2E-19104166IPR001356Homeobox domain
PfamPF000468.8E-19105160IPR001356Homeobox domain
CDDcd000864.53E-17109160No hitNo description
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PROSITE profilePS5084837.394268507IPR002913START domain
SuperFamilySSF559617.0E-33270504No hitNo description
CDDcd088753.11E-105272503No hitNo description
SMARTSM002342.6E-63277504IPR002913START domain
PfamPF018523.6E-55279504IPR002913START domain
Gene3DG3DSA:3.30.530.201.0E-6318503IPR023393START-like domain
SuperFamilySSF559613.57E-12534754No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MGVVDMSNNH PPSHETKDFF PSPALSLSLA GIFRDGGAGG NMETEEVEDG SASRGRPREE  60
STVEISSENS GPLRSRGSDD DFEHDDITCN EHEEDPNNNS KKKKRKKYHR HTAEQIREME  120
ALFKESPHPD EKQRQQLSKQ LGLHPRQVKF WFQNRRTQIK AIQERHENSL LKAEIEKLRE  180
ENKGLRETLK NPSCPNCGFT ISSNNDAPTL PAEEHQLRIE NARLRAEVEK LRAALGKYPI  240
GTSPSSSSCS GGNEEENRSA LDYYTGIFGL EKSRIMHVVN QAMEEVKKMA TSGEPLWIRS  300
FETGREILNY DEYMKEFPTE NPRDDGRPNK RCIEASREMG IVFMQLPRLV QTFMDVNQWK  360
EMFPSMISKA ATVDVICNGE GANCWDGAVQ LMFAEVQMLT PVVGTREVYF VRYCKQLSVG  420
QWAIVDVSVD KVEDNIDASL VKCRKLPSGC FLQEQSNAHC KVTWVEHLEC QKSTVNSLYR  480
VIVNSGLAFG ARRWMATLQQ QCERLLFSMA TNIPTKDTTG VATLAGRKSI LTLAQRMTWN  540
FYRMLGASSY NTWNKIPSKT GQEDIRVASR KNLTDTGEPQ GVILCVVSSI WLPVSRNVLF  600
DFLKDETRRH EWDVMSNGGP AQSVANLAKG QDKGNAVSIQ AVKLRENKMW ILQDTCTNAY  660
ESTVVYAPVD IAGMQSVITG CDSSNTAVLP SGFSILPDGI ESRGLVITSK PEDRSSEGGS  720
LLTVAFQILT SNSPTAKLSK ESVESVNNLL SCTLHKIKTS FQCDDGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100105KKKKRK
2100106KKKKRKK
3102106KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1981661e-121DQ198166.1 Nicotiana tabacum cultivar Samsun NN homeodomain protein protodermal factor 2-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778213.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A1U7WHU10.0A0A1U7WHU1_NICSY; homeobox-leucine zipper protein GLABRA 2
STRINGXP_009778213.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62282328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]