PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009777912.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92503.5 Da    PI: 5.998
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009777912.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-181674357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_009777912.1 16 KYVRYTPEQVEALERVYAECPKPTSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                    6789*****************************************************97 PP
2START171.17.2e-541643712204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++   +l vi +g  g+++l+
  XP_009777912.1 164 IAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLNILSVIPTGngGTIELI 257
                     68999*****************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     + +++a+++l++ Rdf+++Ry+ +l++g++vi+++S++  +  p+     s+vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l+
  XP_009777912.1 258 YLQTYAPTTLASaRDFWTLRYTTSLEDGSLVICERSLTTATGGPTgppATSFVRAEMLPSGYLIRPCEGGGSMIHIVDHIDLDAWSVPEVLRPLY 352
                     ****************************************999998999********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++kt+va+l++ +
  XP_009777912.1 353 ESSKILAQKTTVAALRHIR 371
                     ***************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4511175IPR001356Homeobox domain
SMARTSM003892.3E-151379IPR001356Homeobox domain
SuperFamilySSF466893.12E-161679IPR009057Homeodomain-like
CDDcd000861.39E-161676No hitNo description
PfamPF000466.2E-161674IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-181874IPR009057Homeodomain-like
CDDcd146861.23E-568107No hitNo description
PROSITE profilePS5084826154382IPR002913START domain
CDDcd088752.92E-70158374No hitNo description
SMARTSM002342.0E-51163373IPR002913START domain
Gene3DG3DSA:3.30.530.205.1E-23163368IPR023393START-like domain
SuperFamilySSF559611.3E-37164375No hitNo description
PfamPF018521.4E-51164371IPR002913START domain
PfamPF086705.8E-48698842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MALCLNNKNQ IMDNSKYVRY TPEQVEALER VYAECPKPTS LRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LTTVNRKLSA MNKLLMEEND RLQKQVSQLV YENGYMKQQI  120
NTVSSTTTDT SCESVVVNGQ QQRKNPTPQH PERDANNPAG LLAIAEETLA EFLGKATGTA  180
VDWVQMIGMK PGPDSIGIVA VSRNCSGVAA RACGLVSLEP TKVAEILKDR PSWYRDCRCL  240
NILSVIPTGN GGTIELIYLQ TYAPTTLASA RDFWTLRYTT SLEDGSLVIC ERSLTTATGG  300
PTGPPATSFV RAEMLPSGYL IRPCEGGGSM IHIVDHIDLD AWSVPEVLRP LYESSKILAQ  360
KTTVAALRHI RQIAQETSGE IQYTGGRQPA VLRALSQRLC RGFNDAVNGF VDDGWTVMDS  420
DGVEDVTVAI NSSSTKFLGS QYNTLSILPT FGGVLCARAS MLLQNVPPAL LVRFLREHRS  480
EWADYGVDAY SAASLKASPY AVPCARPGGF PSSQVILPLA QTVEHEEFLE VVRLEGPAFS  540
PEDIALSRDM YLLQLCSGVD ENASGACAQL VFAPIDESFG DDAPLLPSGF RVIPLEPKSD  600
GPAATRTLDL ASTLEAGTGG TRPAGEIEAS NYNHRSVLTI AFQFTFESHY RDNVAAMARQ  660
YVRSIVGSVQ RVAMAIAPSR LSSQLTPKPF PGSPEAVTLA RWISRSYRVH TGGDLLQVDS  720
QDGDAVLKQL WHHSDAIMCC SVKMNASAVF TFANQAGLDM LETTLLALQD IMLDKILDEA  780
GRKVLLSEFS KIMQQGFAYL PAGICVSSMG RPVSYEQAVA WKVLNDEDSN HCLAFMFINW  840
SFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5603200.0AY560320.1 Nicotiana sylvestris PHAVOLUTA-like HD-ZIPIII protein mRNA, complete cds.
GenBankJQ6869320.0JQ686932.1 Nicotiana tabacum cultivar SR1 PHV HD-ZIPIII (PHV) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289498.10.0homeobox-leucine zipper protein ATHB-14-like
RefseqNP_001313006.10.0homeobox-leucine zipper protein ATHB-14-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ6Q4E90.0Q6Q4E9_NICSY; PHAVOLUTA-like HD-ZIPIII protein
TrEMBLV9LXH70.0V9LXH7_TOBAC; PHV HD-ZIPIII
STRINGXP_009777911.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. McHale NA,Koning RE
    PHANTASTICA regulates development of the adaxial mesophyll in Nicotiana leaves.
    Plant Cell, 2004. 16(5): p. 1251-62
    [PMID:15084717]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]