PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009777911.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92631.6 Da    PI: 5.998
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009777911.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-181674357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_009777911.1 16 KYVRYTPEQVEALERVYAECPKPTSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                    6789*****************************************************97 PP
2START171.17.2e-541653722204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++   +l vi +g  g+++l+
  XP_009777911.1 165 IAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLNILSVIPTGngGTIELI 258
                     68999*****************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     + +++a+++l++ Rdf+++Ry+ +l++g++vi+++S++  +  p+     s+vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l+
  XP_009777911.1 259 YLQTYAPTTLASaRDFWTLRYTTSLEDGSLVICERSLTTATGGPTgppATSFVRAEMLPSGYLIRPCEGGGSMIHIVDHIDLDAWSVPEVLRPLY 353
                     ****************************************999998999********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++kt+va+l++ +
  XP_009777911.1 354 ESSKILAQKTTVAALRHIR 372
                     ***************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4511175IPR001356Homeobox domain
SMARTSM003892.3E-151379IPR001356Homeobox domain
SuperFamilySSF466893.12E-161679IPR009057Homeodomain-like
CDDcd000861.40E-161676No hitNo description
PfamPF000466.2E-161674IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-181874IPR009057Homeodomain-like
CDDcd146861.23E-568107No hitNo description
PROSITE profilePS5084826155383IPR002913START domain
CDDcd088752.75E-70159375No hitNo description
Gene3DG3DSA:3.30.530.204.7E-23163369IPR023393START-like domain
SMARTSM002342.0E-51164374IPR002913START domain
SuperFamilySSF559611.3E-37165376No hitNo description
PfamPF018521.4E-51165372IPR002913START domain
PfamPF086705.8E-48699843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MALCLNNKNQ IMDNSKYVRY TPEQVEALER VYAECPKPTS LRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LTTVNRKLSA MNKLLMEEND RLQKQVSQLV YENGYMKQQI  120
NTQVSSTTTD TSCESVVVNG QQQRKNPTPQ HPERDANNPA GLLAIAEETL AEFLGKATGT  180
AVDWVQMIGM KPGPDSIGIV AVSRNCSGVA ARACGLVSLE PTKVAEILKD RPSWYRDCRC  240
LNILSVIPTG NGGTIELIYL QTYAPTTLAS ARDFWTLRYT TSLEDGSLVI CERSLTTATG  300
GPTGPPATSF VRAEMLPSGY LIRPCEGGGS MIHIVDHIDL DAWSVPEVLR PLYESSKILA  360
QKTTVAALRH IRQIAQETSG EIQYTGGRQP AVLRALSQRL CRGFNDAVNG FVDDGWTVMD  420
SDGVEDVTVA INSSSTKFLG SQYNTLSILP TFGGVLCARA SMLLQNVPPA LLVRFLREHR  480
SEWADYGVDA YSAASLKASP YAVPCARPGG FPSSQVILPL AQTVEHEEFL EVVRLEGPAF  540
SPEDIALSRD MYLLQLCSGV DENASGACAQ LVFAPIDESF GDDAPLLPSG FRVIPLEPKS  600
DGPAATRTLD LASTLEAGTG GTRPAGEIEA SNYNHRSVLT IAFQFTFESH YRDNVAAMAR  660
QYVRSIVGSV QRVAMAIAPS RLSSQLTPKP FPGSPEAVTL ARWISRSYRV HTGGDLLQVD  720
SQDGDAVLKQ LWHHSDAIMC CSVKMNASAV FTFANQAGLD MLETTLLALQ DIMLDKILDE  780
AGRKVLLSEF SKIMQQGFAY LPAGICVSSM GRPVSYEQAV AWKVLNDEDS NHCLAFMFIN  840
WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5603200.0AY560320.1 Nicotiana sylvestris PHAVOLUTA-like HD-ZIPIII protein mRNA, complete cds.
GenBankJQ6869320.0JQ686932.1 Nicotiana tabacum cultivar SR1 PHV HD-ZIPIII (PHV) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777911.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X1
RefseqXP_016503307.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1S4CPX60.0A0A1S4CPX6_TOBAC; homeobox-leucine zipper protein ATHB-14-like isoform X1
TrEMBLA0A1U7WKU80.0A0A1U7WKU8_NICSY; homeobox-leucine zipper protein ATHB-14-like isoform X1
STRINGXP_009777911.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. McHale NA,Koning RE
    PHANTASTICA regulates development of the adaxial mesophyll in Nicotiana leaves.
    Plant Cell, 2004. 16(5): p. 1251-62
    [PMID:15084717]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]