PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009777819.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 364aa MW: 39839.6 Da PI: 9.8157 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 9.9e-21 | 134 | 183 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g XP_009777819.1 134 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 183 8********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.51E-21 | 133 | 193 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.3E-33 | 134 | 192 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-23 | 134 | 192 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.3E-37 | 134 | 197 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-14 | 134 | 183 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.712 | 134 | 191 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-12 | 135 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-12 | 157 | 173 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MSSSATPMFS GYSQTREMSA MVTALTHVVS GRRQGELTYR PEITTSFGGG SPSSSSSGSW 60 AGQKRRRDQE ESVAAEQVQR VYGGFGEFRS GESSSSVKPA SSMVAPPTTT TAAAQPTPQS 120 AEGGAEETGE RRKRYRGVRQ RPWGKWAAEI RDPHKAARVW LGTFDTAEAA ARAYDEAALR 180 FRGNRAKLNF PENVRLLPQQ QQQYQPTTRS AISSSSAASQ FPLMAAATTP SPFFQTYQPQ 240 QQQQQPPFQS SEMVRDYWEY SQLLQNPGDF HAQQSSSSLL EQMLFASSSM GLLHSHTFPS 300 YSSSSSLATS SSASSPAYPL FYSAQQSRFF QPPQTSHQNQ TSSSTSSFPA PFWTSSTHYP 360 PSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-23 | 133 | 194 | 4 | 66 | ATERF1 |
3gcc_A | 1e-23 | 133 | 194 | 4 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ538424 | 1e-103 | AJ538424.1 Nicotiana tabacum cDNA-AFLP-fragment BC1-M43-024. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009777819.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF110-like isoform X4 | ||||
Swissprot | Q9FGF8 | 2e-35 | ABR1_ARATH; Ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A1U7WT15 | 0.0 | A0A1U7WT15_NICSY; ethylene-responsive transcription factor ERF110-like isoform X4 | ||||
STRING | XP_009777816.1 | 1e-175 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 5e-22 | ethylene response factor 110 |
Publications ? help Back to Top | |||
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