PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009777818.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 365aa MW: 39968.7 Da PI: 9.6855 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 1e-20 | 135 | 184 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g XP_009777818.1 135 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 184 8********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.36E-21 | 134 | 194 | No hit | No description |
Pfam | PF00847 | 2.7E-14 | 135 | 184 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-37 | 135 | 198 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-33 | 135 | 193 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 135 | 193 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.712 | 135 | 192 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-12 | 136 | 147 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-12 | 158 | 174 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MSSSATPMFS GYSQTREMSA MVTALTHVVS GRRQGELTYR PEITTSFGGG SPSSSSSGSW 60 AGQKRRRDQE ESVAAEQVQR VYGGFGEFRS GESSSSVKPE ASSMVAPPTT TTAAAQPTPQ 120 SAEGGAEETG ERRKRYRGVR QRPWGKWAAE IRDPHKAARV WLGTFDTAEA AARAYDEAAL 180 RFRGNRAKLN FPENVRLLPQ QQQQYQPTTR SAISSSSAAS QFPLMAAATT PSPFFQTYQP 240 QQQQQQPPFQ SSEMVRDYWE YSQLLQNPGD FHAQQSSSSL LEQMLFASSS MGLLHSHTFP 300 SYSSSSSLAT SSSASSPAYP LFYSAQQSRF FQPPQTSHQN QTSSSTSSFP APFWTSSTHY 360 PPSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-23 | 134 | 195 | 4 | 66 | ATERF1 |
3gcc_A | 1e-23 | 134 | 195 | 4 | 66 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ538424 | 1e-103 | AJ538424.1 Nicotiana tabacum cDNA-AFLP-fragment BC1-M43-024. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009777816.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1 | ||||
Refseq | XP_009777818.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X3 | ||||
Refseq | XP_016483068.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2 | ||||
Swissprot | Q9FGF8 | 3e-35 | ABR1_ARATH; Ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A1S4B2Q4 | 0.0 | A0A1S4B2Q4_TOBAC; ethylene-responsive transcription factor ABR1-like isoform X2 | ||||
TrEMBL | A0A1U7WGN8 | 0.0 | A0A1U7WGN8_NICSY; ethylene-responsive transcription factor ABR1-like isoform X3 | ||||
TrEMBL | A0A1U7WKJ5 | 0.0 | A0A1U7WKJ5_NICSY; ethylene-responsive transcription factor ABR1-like isoform X1 | ||||
STRING | XP_009777816.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 5e-22 | ethylene response factor 110 |
Publications ? help Back to Top | |||
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