PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009777817.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 366aa    MW: 40097.8 Da    PI: 9.5336
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009777817.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-20136185255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  XP_009777817.1 136 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 185
                     8********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.11E-21135195No hitNo description
PROSITE profilePS5103225.712136193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-33136194IPR001471AP2/ERF domain
SMARTSM003806.3E-37136199IPR001471AP2/ERF domain
PfamPF008472.7E-14136185IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23136194IPR016177DNA-binding domain
PRINTSPR003679.1E-12137148IPR001471AP2/ERF domain
PRINTSPR003679.1E-12159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSSSATPMFS GYSQTREMSA MVTALTHVVS GRRQGELTYR PEITTSFGGG SPSSSSSGSW  60
AGQKRRRDQE ESVAAEQVQR VYGGFGEFRS GESSSSVKPE EASSMVAPPT TTTAAAQPTP  120
QSAEGGAEET GERRKRYRGV RQRPWGKWAA EIRDPHKAAR VWLGTFDTAE AAARAYDEAA  180
LRFRGNRAKL NFPENVRLLP QQQQQYQPTT RSAISSSSAA SQFPLMAAAT TPSPFFQTYQ  240
PQQQQQQPPF QSSEMVRDYW EYSQLLQNPG DFHAQQSSSS LLEQMLFASS SMGLLHSHTF  300
PSYSSSSSLA TSSSASSPAY PLFYSAQQSR FFQPPQTSHQ NQTSSSTSSF PAPFWTSSTH  360
YPPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23135196466ATERF1
3gcc_A1e-23135196466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5384241e-103AJ538424.1 Nicotiana tabacum cDNA-AFLP-fragment BC1-M43-024.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777817.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2
RefseqXP_016483059.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
SwissprotQ9FGF85e-35ABR1_ARATH; Ethylene-responsive transcription factor ABR1
TrEMBLA0A1S4B2I50.0A0A1S4B2I5_TOBAC; ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A1U7WCV20.0A0A1U7WCV2_NICSY; ethylene-responsive transcription factor ABR1-like isoform X2
STRINGXP_009777816.11e-176(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-22ethylene response factor 110
Publications ? help Back to Top
  1. Choi DS,Hwang BK
    Proteomics and functional analyses of pepper abscisic acid-responsive 1 (ABR1), which is involved in cell death and defense signaling.
    Plant Cell, 2011. 23(2): p. 823-42
    [PMID:21335377]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Sanyal SK, et al.
    Arabidopsis CBL interacting protein kinase 3 interacts with ABR1, an APETALA2 domain transcription factor, to regulate ABA responses.
    Plant Sci., 2017. 254: p. 48-59
    [PMID:27964784]
  5. Choi SW,Lee SB,Na YJ,Jeung SG,Kim SY
    Arabidopsis MAP3K16 and Other Salt-Inducible MAP3Ks Regulate ABA Response Redundantly.
    Mol. Cells, 2017. 40(3): p. 230-242
    [PMID:28292003]