PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009777770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TALE | ||||||||
Protein Properties | Length: 343aa MW: 38387.2 Da PI: 5.2469 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.2e-09 | 271 | 305 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ XP_009777770.1 271 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 305 569*****************************885 PP | |||||||
2 | ELK | 41.2 | 3.4e-14 | 225 | 246 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ XP_009777770.1 225 ELKGQLLRKYSGYLGSLKQEFM 246 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 7.7E-21 | 88 | 132 | IPR005540 | KNOX1 |
Pfam | PF03790 | 5.2E-23 | 90 | 129 | IPR005540 | KNOX1 |
SMART | SM01256 | 5.8E-26 | 137 | 188 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.5E-21 | 141 | 187 | IPR005541 | KNOX2 |
SMART | SM01188 | 2.8E-8 | 225 | 246 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.174 | 225 | 245 | IPR005539 | ELK domain |
Pfam | PF03789 | 5.6E-11 | 225 | 246 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.957 | 245 | 308 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-12 | 247 | 312 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.45E-19 | 247 | 322 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-28 | 250 | 310 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.07E-12 | 257 | 309 | No hit | No description |
Pfam | PF05920 | 8.1E-17 | 265 | 304 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 283 | 306 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MEGGGSSGNT SCLMGYGDDN NNNNSGNAAL CPPPMMMMMM PPPPINNNNG ESSNNIGGNN 60 NNNILFLPFM DNNNNNNPHE DANCSSSSSI KSKIMAHPHY PRLLSAYVNC QKIGAPPEVV 120 ARLEEVCATS ATIGRNSGGI IGEDPALDQF MEAYCEMLTK YEQELSKPFK EAMVFLSRIE 180 CQFKALTLTS SSESALGEAI DRNGSSEEEV DVNNGFIDPQ AEDQELKGQL LRKYSGYLGS 240 LKQEFMKKRK KGKLPKEARQ QLLDWWTRHY KWPYPSESQK LALAESTGLD QKQINNWFIN 300 QRKRHWKPSE DMQFVVMDAA HPHYYMDNVL GNPFPMDITP TLL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 240 | 249 | LKQEFMKKRK |
2 | 246 | 250 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ686930 | 0.0 | JQ686930.1 Nicotiana tabacum cultivar SR1 shoot meristemless (STM) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009777770.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like LET6 isoform X2 | ||||
Swissprot | O22299 | 1e-157 | LET6_SOLLC; Homeobox protein knotted-1-like LET6 | ||||
TrEMBL | A0A1U7WU61 | 0.0 | A0A1U7WU61_NICSY; homeobox protein knotted-1-like LET6 isoform X2 | ||||
STRING | XP_009613677.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-133 | KNOX/ELK homeobox transcription factor |