PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009777769.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 345aa    MW: 38557.4 Da    PI: 5.2469
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009777769.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092733072155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yps++++  LA+++gL+++q+ +WF N+R ++
  XP_009777769.1 273 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 307
                     569*****************************885 PP
2ELK41.23.5e-14227248122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK qLlrKYsgyLgsLkqEF+
  XP_009777769.1 227 ELKGQLLRKYSGYLGSLKQEFM 248
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.7E-2188132IPR005540KNOX1
PfamPF037905.2E-2390129IPR005540KNOX1
SMARTSM012565.8E-26137188IPR005541KNOX2
PfamPF037912.5E-21141187IPR005541KNOX2
PfamPF037895.6E-11227248IPR005539ELK domain
PROSITE profilePS5121311.174227247IPR005539ELK domain
SMARTSM011882.8E-8227248IPR005539ELK domain
PROSITE profilePS5007112.957247310IPR001356Homeobox domain
SMARTSM003891.2E-12249314IPR001356Homeobox domain
SuperFamilySSF466891.45E-19249324IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-28252312IPR009057Homeodomain-like
CDDcd000861.99E-12259311No hitNo description
PfamPF059208.1E-17267306IPR008422Homeobox KN domain
PROSITE patternPS000270285308IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEGGGSSGNT SCLMGYGDDN NNNNSGNAAL CPPPMMMMMM PPPPINNNNG ESSNNIGGNN  60
NNNILFLPFM DNNNNNNPHE DANCSSSSSI KSKIMAHPHY PRLLSAYVNC QKIGAPPEVV  120
ARLEEVCATS ATIGRNSGGI IGEDPALDQF MEAYCEMLTK YEQELSKPFK EAMVFLSRIE  180
CQFKALTLTS SSESVAALGE AIDRNGSSEE EVDVNNGFID PQAEDQELKG QLLRKYSGYL  240
GSLKQEFMKK RKKGKLPKEA RQQLLDWWTR HYKWPYPSES QKLALAESTG LDQKQINNWF  300
INQRKRHWKP SEDMQFVVMD AAHPHYYMDN VLGNPFPMDI TPTLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242251LKQEFMKKRK
2248252KKRKK
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6869300.0JQ686930.1 Nicotiana tabacum cultivar SR1 shoot meristemless (STM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311561.10.0homeobox protein knotted-1-like LET6
RefseqXP_009777769.10.0PREDICTED: homeobox protein knotted-1-like LET6 isoform X1
SwissprotO222991e-157LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBLA0A1U7WSW40.0A0A1U7WSW4_NICSY; homeobox protein knotted-1-like LET6 isoform X1
TrEMBLV9LXM50.0V9LXM5_TOBAC; Shoot meristemless
STRINGXP_009777769.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-136KNOX/ELK homeobox transcription factor