PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009777706.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CO-like | ||||||||
Protein Properties | Length: 447aa MW: 50873.8 Da PI: 4.8737 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29.4 | 1.7e-09 | 17 | 59 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+++ +k+++++C ++ +lC++C ++ H+ H++v XP_009777706.1 17 RACDNCIRKRARWYCPADDAFLCQNCDSSVHSAnplarrHERV 59 78*****************************667888888876 PP | |||||||
2 | CCT | 67.9 | 2.8e-23 | 394 | 437 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_009777706.1 394 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 437 9*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.836 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-11 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.5E-8 | 17 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.94E-11 | 17 | 61 | No hit | No description |
Pfam | PF06203 | 6.0E-18 | 394 | 436 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.083 | 394 | 436 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MVSERKLASA MGGKTVRACD NCIRKRARWY CPADDAFLCQ NCDSSVHSAN PLARRHERVR 60 LKTSSLKESS PDENFPNLES PVSVSVSVSV PSWHRGFTRK ARTPRNGRKV SKSTEEEEEE 120 EVILKNPIHL VPEILSDENS LDENEEQLLY RVPIFDPFVA ELYTSATRND RMENVQTAAD 180 SEFKPESKET LQHDDNICNG DLNRFHGMLP SEMELAEFAA DVENLLGKGL DDESFDMEGL 240 GLLGGCNKEE NSMECSMVSI HEKVKIEDEG EGDEVVMDTT TTNHDIDING DTFEFKFDYD 300 SPMNINGGDE VGEVVMKING EDGDGNYNEK KKILLNLDYE SVLTAWADQR SPWTNGERPE 360 LDSNDCWPDC MGNCGTIHPY GIMNGHTTII DRGREARVSR YREKRRTRLF SKKIRYEVRK 420 LNAEKRPRMK GRFVKRSNLV PNYPLLK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 404 | 420 | RRTRLFSKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009777706.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | A0A1U7WK78 | 0.0 | A0A1U7WK78_NICSY; zinc finger protein CONSTANS-LIKE 16-like | ||||
STRING | XP_009777706.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 4e-96 | B-box type zinc finger protein with CCT domain |