PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009777337.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 424aa    MW: 47296.7 Da    PI: 5.6981
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009777337.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.8e-08338378954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  XP_009777337.1 338 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 378
                     69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-14334390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-13335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-12337387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-5338378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-4351383No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MESLNWDESP VFQEFGASFD PIHVISNWNM PQRQEAAVRL AADSMAAKSA ADLSRDCAEN  60
GFSSSPILNM PNYISDSNPM ALNGLMADFS SNGQVQEIKP APKLLSNACS LESLDCLLSA  120
TTTTNNTDTS IEDDGMSMIF VDNSKGLWNF NSSSEHNASS EALKQSLGYQ QLLTCHESGH  180
KILQEEERKR KPYKPINANE LDETVSQSSP NHKYNKRSHN QTLENSPSEF NLFESDSLNG  240
DCGNFQLISE KQSKSKKPRL IAENYNKSRP ISSNINFQQA SSSVSSIDQE PDPEAIAQMK  300
EMIYRAAAFR PVNFGPEAPE KPKRKNVRIS TDPQTVAARQ RRERISERIR VLQRLVPGGS  360
KMDTASMLDE AANYLKFLRS QVEALEAIGQ KQDPFSSIQF NYPFPMQLPH FPVQNPNPIH  420
GPKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338343RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777337.10.0PREDICTED: transcription factor bHLH87-like
RefseqXP_009777338.10.0PREDICTED: transcription factor bHLH87-like
RefseqXP_009777339.10.0PREDICTED: transcription factor bHLH87-like
RefseqXP_016504990.10.0PREDICTED: transcription factor bHLH87-like
TrEMBLA0A1S4CV370.0A0A1S4CV37_TOBAC; transcription factor bHLH87-like
TrEMBLA0A1U7WRM80.0A0A1U7WRM8_NICSY; transcription factor bHLH87-like
STRINGXP_009777337.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-61bHLH family protein