PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009777336.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 491aa    MW: 54215.7 Da    PI: 8.2809
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009777336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.66.3e-42173249278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cqv+gC++dls+ k+y++rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q+
  XP_009777336.1 173 CQVQGCSKDLSSSKDYNKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQT 249
                     **************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-33168234IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.334170247IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.03E-39171251IPR004333Transcription factor, SBP-box
PfamPF031105.9E-32173246IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MYCRKKTSQF LKQKMESWSF FSVGKGFVSE DSVSLDDRII REKHCVTSWE LNNPSSFGST  60
VGIENQEFPK LGTPNNQIRD VLSNKISGGG VFSSVTVPQI VFSGASESSS KMSRSVVESN  120
CRDSSLVDLK LGSFPGQQHV QSFKSPKIMT NLSSNVPDKR MRSGGLKYQT PYCQVQGCSK  180
DLSSSKDYNK RHKVCEVHSK TAKVIVNGIE QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH  240
NERRRKPQTG RFQGTSFAMS SSLCQNILGS SILYQPKYEM EDWYKNVKVE DAADYNPRLT  300
MPFTNGHSQS KSLCTSYHAE KQCPPFHDEE ITAPTRSKID ESSKSYLHDI EGSDFVTRPL  360
VQSFSIGGDV LHVLDSISTI QGISGISNSG CAPSLLSSQS QDSSNQSSLI PTASHLITPS  420
SNAHYNVTHI SEKPLGVSPQ ALSSRVPDTF NSAGVNSGES CLEQILVSNS SNNCFINDPM  480
IDLLQLSSQI Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29163246584squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0733030.0LC073303.1 Nicotiana tabacum NtabSPL6-2 mRNA for squamosa promoter binding protein NtabSPL6-2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777336.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X2
TrEMBLA0A1U7WJ900.0A0A1U7WJ90_NICSY; squamosa promoter-binding-like protein 6 isoform X2
STRINGXP_009777325.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-45SBP family protein