PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009777143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CO-like | ||||||||
Protein Properties | Length: 336aa MW: 37442.9 Da PI: 6.3455 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.6 | 2.2e-07 | 10 | 43 | 3 | 36 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36 +++C+ ++ ++ fC+ + +lC +C +++H XP_009777143.1 10 AKRCDSCKATAATVFCKADMAFLCLSCDSKIHAA 43 579******99*********************54 PP | |||||||
2 | zf-B_box | 24.6 | 5.2e-08 | 53 | 95 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++C+ +e+ +++ C+ + lC +C + +H+ H++ XP_009777143.1 53 VWVCEVCEHAPASVTCKADAAALCVTCDQDIHSAnplarrHER 95 689*****************************65777777876 PP | |||||||
3 | CCT | 69.9 | 6.4e-24 | 272 | 315 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_009777143.1 272 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 315 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 6.2E-12 | 8 | 55 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.153 | 8 | 55 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.41E-7 | 12 | 55 | No hit | No description |
PROSITE profile | PS50119 | 10.722 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.2E-6 | 53 | 98 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.71E-9 | 54 | 98 | No hit | No description |
SMART | SM00336 | 3.3E-11 | 56 | 98 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.787 | 272 | 314 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.9E-18 | 272 | 314 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MVAESWSATA KRCDSCKATA ATVFCKADMA FLCLSCDSKI HAANKLASRH ARVWVCEVCE 60 HAPASVTCKA DAAALCVTCD QDIHSANPLA RRHERFPIVP FYDSASAKSR GADEINPPHP 120 ETEEEVEAES WLLQTPNNNA QGIEYKSTEY LFSDVDPYAE MDMITDQKSC TDIQLHVQEY 180 KDDCVVPHVQ NKNEIHLQGP VVNGYPTYEM DLSGSKPFMY NFSSQSISQS VSSSSMEVGV 240 VPDHNTMADV SNTFVRNSST GGLPNPLSNL DREARVLRYR EKRKNRKFEK TIRYASRKAY 300 AETRPRIKGR FAKRTENEVD SLIASSDASY GVVPSF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009777143.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 4-like | ||||
Refseq | XP_016509100.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 4-like | ||||
Swissprot | Q940T9 | 5e-96 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A1S4D6M3 | 0.0 | A0A1S4D6M3_TOBAC; zinc finger protein CONSTANS-LIKE 4-like | ||||
TrEMBL | A0A1U7WEQ9 | 0.0 | A0A1U7WEQ9_NICSY; zinc finger protein CONSTANS-LIKE 4-like | ||||
STRING | XP_009777143.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 2e-94 | CONSTANS-like 4 |