PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009777029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 26808.1 Da PI: 6.2544 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.1e-16 | 59 | 108 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +Wv+eIr+p +k+ r++lg+f t+e Aa+a++ a+++l+g XP_009777029.1 59 FYRGVRRRN-GDKWVCEIREP---NKKSRIWLGTFSTPEIAARAHDVAALALRG 108 7*****877.9*********9...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.83E-20 | 59 | 117 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.1E-31 | 59 | 122 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.931 | 59 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.06E-30 | 60 | 118 | No hit | No description |
PRINTS | PR00367 | 1.4E-7 | 60 | 71 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-10 | 60 | 108 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-30 | 60 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-7 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MDFEDDQTSH SSCSSSDHDI LDKEKNFNLS SCSMNVIKPS LHNKRRTGRK KFKETRHPFY 60 RGVRRRNGDK WVCEIREPNK KSRIWLGTFS TPEIAARAHD VAALALRGTK ASLNFPESSW 120 SLPKAQSSSP RDIQIAALQV SNKEVVSSPL KHTTSYLELE ESSCFQSTNN DQENSLKGYN 180 DSCELMEFVD EEAMFNMPIL IDSMAEGMLM TPPAMKRGFN WGDVEENVEF TLWKD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 57 | 116 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009777029.1 | 1e-177 | PREDICTED: dehydration-responsive element-binding protein 1B-like | ||||
Refseq | XP_016488917.1 | 1e-177 | PREDICTED: dehydration-responsive element-binding protein 1B-like | ||||
Swissprot | A2WZI4 | 2e-54 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 2e-54 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A1S4BJC2 | 1e-176 | A0A1S4BJC2_TOBAC; dehydration-responsive element-binding protein 1B-like | ||||
TrEMBL | A0A1U7WQR4 | 1e-176 | A0A1U7WQR4_NICSY; dehydration-responsive element-binding protein 1B-like | ||||
STRING | XP_009777029.1 | 1e-176 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 3e-43 | C-repeat/DRE binding factor 2 |
Publications ? help Back to Top | |||
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