PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009776873.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 308aa MW: 34480.3 Da PI: 6.62

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009776873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106	1.9e-33	172	229	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers edp+vv++tYeg+Hnh+ XP_009776873.1 172 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCSVKKRVERSYEDPSVVITTYEGQHNHH 229 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.7E-35	156	231	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-29	163	231	IPR003657	WRKY domain
PROSITE profile	PS50811	31.984	166	231	IPR003657	WRKY domain
SMART	SM00774	4.6E-39	171	230	IPR003657	WRKY domain
Pfam	PF03106	1.2E-26	172	229	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MSDNNPFYHD YLGTGGINNA FSNFFGDQNP SIYDQIIPPN TQTPHQDFDP SSYMSTLTEC 60 LHGSMDYNSL SNVLGMSCSS SEVVCPPLDQ ESSRKNTAEI PLTPNSLVSS SSSEAGGEED 120 SSKSKKDLQA KDQCEDGDDK SKKVSKAKKK GEKKQKEPRF AFMTKSEIDN LEDGYRWRKY 180 GQKAVKNSPF PRSYYRCTSQ KCSVKKRVER SYEDPSVVIT TYEGQHNHHC PATLRGNAAA 240 AMLSPSFLSS SQLIPQDVLF AQMLTTPTNQ NQLPINYSVY NYQQQPQLGP EYGLFQDMVA 300 SLIHKREP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-28	161	232	7	78	Probable WRKY transcription factor 4
2lex_A	1e-28	161	232	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776873.1	0.0	PREDICTED: probable WRKY transcription factor 71
Refseq	XP_016455219.1	0.0	PREDICTED: probable WRKY transcription factor 71
TrEMBL	A0A1S3YSL8	0.0	A0A1S3YSL8_TOBAC; probable WRKY transcription factor 71
TrEMBL	A0A1U7WDY3	0.0	A0A1U7WDY3_NICSY; probable WRKY transcription factor 71
STRING	XP_009776873.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	1e-52	WRKY DNA-binding protein 71