PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009776786.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 542aa    MW: 59209.8 Da    PI: 5.6936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009776786.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09357405355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_009776786.1 357 NSHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 405
                     58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-17352423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-10352409No hitNo description
PROSITE profilePS5088815.51354404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17355421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6357405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-10360410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MDMSSKNDTE QLKVNEDAGN FQLPNMSLEW QLSDTNLTNA SIGMIPKSDP TVDSFYPTIW  60
DRPTNSPNLS FYGNNVQINP STTNPHGIAE IGSGRARGGV DRTVGMSWNP PNAMLKGGVF  120
VPPNIGMLPQ SLAQLPADSG FIERAARFSC FSGGNFSDMM NPFSIPESVK PCYRGLAPTC  180
RSEDVFASNG LNSPSAINPQ KQHMRNAVES SKDVALHREH ETNKESPLKN AKKNENFGKS  240
QGEGKEAVGL SGNESDEAEC SGRQEEMEGA REESSSKGLD SKKRKRNGQD AQPDQMKGAQ  300
QPPAEHAQDQ TEIQGGPNLN STASKPGEKN SKERSQASDP PKEEYIHIRA RRGQATNSHS  360
LAERVRREKI SERMKYLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP  420
QLDFNLDGLL AKDILQSQAG PSSSLVFPPD NMTMPYTSLH ALQSGLLQSG FPGVGNCTDS  480
FRRSINSHYA SMSGGYKDTS SQVPNIWDDQ LHNVVEMEFN SSAPLNSQDL SSLPPGQMKA  540
EP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776786.10.0PREDICTED: transcription factor bHLH49-like
TrEMBLA0A1U7WHP30.0A0A1U7WHP3_NICSY; transcription factor bHLH49-like
STRINGXP_009776786.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28712150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-109bHLH family protein