PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009776702.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 247aa    MW: 28441.1 Da    PI: 7.2144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009776702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.28e-082464341
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqck 41
                      WT+eE +++  a + +  +   +W+ +a++++ g+++ ++ 
   XP_009776702.1 24 EWTKEENKKFESALAIYDEKtpnRWSMVAAMIP-GKSALDVM 64
                     7********************************.***98875 PP
2Myb_DNA-binding41.53.1e-13121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + +++G+g+W+ I+r +   +t+ q+ s+ qky
   XP_009776702.1 121 PWTEEEHRRFLMGLEKYGKGDWRNISRNFVISKTPTQVASHAQKY 165
                      8*****************************789***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-51469IPR009057Homeodomain-like
PROSITE profilePS500906.9691771IPR017877Myb-like domain
SuperFamilySSF466891.93E-111971IPR009057Homeodomain-like
SMARTSM007174.8E-102173IPR001005SANT/Myb domain
CDDcd001671.31E-72471No hitNo description
PfamPF002494.0E-62467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-12111168IPR009057Homeodomain-like
PROSITE profilePS5129419.357114170IPR017930Myb domain
SuperFamilySSF466891.72E-16115169IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-18117169IPR006447Myb domain, plants
SMARTSM007171.2E-11118168IPR001005SANT/Myb domain
PfamPF002492.0E-11121165IPR001005SANT/Myb domain
CDDcd001671.72E-9121165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
METLFPTTFM PNSNWMMQQS KSTEWTKEEN KKFESALAIY DEKTPNRWSM VAAMIPGKSA  60
LDVMMQYKEL VADVSDIEAG LVPTPRHFAS SFTLEFVDHR EIHTFRKRGK SCDQERKKGV  120
PWTEEEHRRF LMGLEKYGKG DWRNISRNFV ISKTPTQVAS HAQKYYLRQL SGGKDKKRPS  180
IHDITTVHLT VDELLNNNNN NKSMCDDTYS VSPLQKSTST GDVLIGFWND SNDEALMTYG  240
SMYDSLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105117RKRGKSCDQERKK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776702.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_016450782.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-83DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1S3YFH90.0A0A1S3YFH9_TOBAC; transcription factor DIVARICATA-like
TrEMBLA0A1U7W9M10.0A0A1U7W9M1_NICSY; transcription factor DIVARICATA-like
STRINGXP_009776702.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-86MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]