PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009776483.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 354aa    MW: 38722.1 Da    PI: 4.6724
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009776483.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.4e-16213249135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp +Rrgp+g++tLCnaCGl+++ kg+
  XP_009776483.1 213 CQHCGISEseTPAMRRGPSGPRTLCNACGLMWANKGM 249
                     *****99999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.9E-975110IPR010399Tify domain
PROSITE profilePS5132013.2175110IPR010399Tify domain
PfamPF062005.4E-1179108IPR010399Tify domain
PfamPF062031.1E-14144185IPR010402CCT domain
PROSITE profilePS5101712.709144186IPR010402CCT domain
SMARTSM004016.5E-11207260IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.2E-15211253IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.98E-12211258No hitNo description
CDDcd002021.38E-15212259No hitNo description
PfamPF003201.7E-13213248IPR000679Zinc finger, GATA-type
PROSITE patternPS003440213240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEAANTRAIG FEEEYMNVAI RVDEYGGGGF NADDISGGCE SSGTEELQHV CSVPPLSACP  60
VVDSDGRVLA AMPMPSRRTS ELTISFEGQV YVFPAVTPDK VQAVLLLLEG SDMASYVPSS  120
HSLALETIKS VDNDAPTRPN ISRRIASLIR FREKRKERCF EKKVRYTCRK EVAQRMHRKN  180
GQFASLKDGE KTYAGNIDSG DSIPHPEPTL RRCQHCGISE SETPAMRRGP SGPRTLCNAC  240
GLMWANKGML RDITKGGRGT PFDKSEPRTP DIKLSTVAPE NSYQKQYQED MQEAAENFVD  300
NSPVGIGSSS ADIDEEQDNL DELANASGTE FEIPASFDEQ IGIDSHMGAD WPGT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754403e-40HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776483.10.0PREDICTED: GATA transcription factor 28-like isoform X1
SwissprotQ5Z4U52e-55GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A1U7WCW00.0A0A1U7WCW0_NICSY; GATA transcription factor 28-like isoform X1
STRINGXP_009776483.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-46ZIM-like 1