PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009776475.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ZF-HD

Protein Properties

Length: 946aa MW: 104175 Da PI: 6.1654

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009776475.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.5	5.1e-31	711	766	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY eClkNhAas+Ggha+DGCgEfmps g egt+ alkC AC+CHRnFHR++ + XP_009776475.1 711 SIRYMECLKNHAASMGGHAIDGCGEFMPS-GGEGTPGALKCEACNCHRNFHRKKIIN 766 789***********************9.8899*****************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14111	1.7E-6	209	288	IPR025558	Domain of unknown function DUF4283
Pfam	PF04770	1.1E-28	712	763	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.3E-28	713	763	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	7.0E-20	713	764	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.382	714	763	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 946 aa Download sequence Send to blast
MKPDNHTAKV EGRDETLGIM ELDKNEHIGG GNEYGSKESE AAPKNTHILE DGLYISDSVD 60 CVPEATHSDS AERVASPVNC STATSEIQAS AETSCSGSSG LSFASDGIAG GIPSVMDDSS 120 SMCSTDSMSF RGTYSNHNIQ KLYGRGWKYG SKSTSNAADW ASEKLNQPLD ALPIGEHHED 180 RKSRPPIQVQ YSTYRGRQAV TFPENYWESL VPDCKLTLIG NFFQRKPRMK EIRADFIAKN 240 PLKGQVKITH YTSQQVSLDF TNEADYDTVL SKKTLTVAVM QISWWSRDIH HEVGKQEWKA 300 MDKERDVKPG IMEQQKTELD ELIGGETEYK IDAPEAVLET PDILGEVSDV SNSLHIVPEV 360 AHPDFRDNDA SPVNCDTDTS KMHPSIGITC CQLSGISAPQ NMIDGTSPYV MNVNSSKCST 420 YSILSIVTTG LSSNDKDQSK SIRDVADSAS KAHSQPLDDL PEARQQMLKK DVAVSHQSEL 480 TESDRERHSS EIPSVSSPPR SPPRSIGSVI QLMSKLKVSV TNDPNSVKRS TSDNSNLTQK 540 SVPLFNSAEN AVLLSVDPHK SIEPKAIEKP LVRSISITTE NFPSNQVTAS ATAEMPMPLL 600 PTLPLLAHSV SPAAQLCADP PTAIDTYVPQ SYPNGIVGSH IFGRSEQAGS GSIFPSPSQA 660 LHQHSLAQRH SQLNSYKVDK NAHLDQESNM IAGPTQLQSL LTTSVSDTTS SIRYMECLKN 720 HAASMGGHAI DGCGEFMPSG GEGTPGALKC EACNCHRNFH RKKIINHRQM AGIGSHIEPR 780 NNSNSRNIHK QSPISQQYQH NYSYSPSSVV NSSDSYPQLP LPISGQICLP QGLEKKEPSL 840 IRPSYSYEMV NHDTVQQWEY FWRDRSRNTS IDHPSLRNEN QNFDMFKPLN YRTSDNIPSE 900 FANEFPHLDI INNLRYDEHG KGRTLMPNSG FQNLSNGSYH LNGHFT

Sequence ? help Back to Top

Protein Sequence Length: 946 aa Download sequence Send to blast

MKPDNHTAKV EGRDETLGIM ELDKNEHIGG GNEYGSKESE AAPKNTHILE DGLYISDSVD  60
CVPEATHSDS AERVASPVNC STATSEIQAS AETSCSGSSG LSFASDGIAG GIPSVMDDSS  120
SMCSTDSMSF RGTYSNHNIQ KLYGRGWKYG SKSTSNAADW ASEKLNQPLD ALPIGEHHED  180
RKSRPPIQVQ YSTYRGRQAV TFPENYWESL VPDCKLTLIG NFFQRKPRMK EIRADFIAKN  240
PLKGQVKITH YTSQQVSLDF TNEADYDTVL SKKTLTVAVM QISWWSRDIH HEVGKQEWKA  300
MDKERDVKPG IMEQQKTELD ELIGGETEYK IDAPEAVLET PDILGEVSDV SNSLHIVPEV  360
AHPDFRDNDA SPVNCDTDTS KMHPSIGITC CQLSGISAPQ NMIDGTSPYV MNVNSSKCST  420
YSILSIVTTG LSSNDKDQSK SIRDVADSAS KAHSQPLDDL PEARQQMLKK DVAVSHQSEL  480
TESDRERHSS EIPSVSSPPR SPPRSIGSVI QLMSKLKVSV TNDPNSVKRS TSDNSNLTQK  540
SVPLFNSAEN AVLLSVDPHK SIEPKAIEKP LVRSISITTE NFPSNQVTAS ATAEMPMPLL  600
PTLPLLAHSV SPAAQLCADP PTAIDTYVPQ SYPNGIVGSH IFGRSEQAGS GSIFPSPSQA  660
LHQHSLAQRH SQLNSYKVDK NAHLDQESNM IAGPTQLQSL LTTSVSDTTS SIRYMECLKN  720
HAASMGGHAI DGCGEFMPSG GEGTPGALKC EACNCHRNFH RKKIINHRQM AGIGSHIEPR  780
NNSNSRNIHK QSPISQQYQH NYSYSPSSVV NSSDSYPQLP LPISGQICLP QGLEKKEPSL  840
IRPSYSYEMV NHDTVQQWEY FWRDRSRNTS IDHPSLRNEN QNFDMFKPLN YRTSDNIPSE  900
FANEFPHLDI INNLRYDEHG KGRTLMPNSG FQNLSNGSYH LNGHFT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776474.1	0.0	PREDICTED: uncharacterized protein LOC104226233 isoform X2
TrEMBL	A0A1U7WP70	0.0	A0A1U7WP70_NICSY; uncharacterized protein LOC104226233 isoform X2
STRING	XP_009776472.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	5e-23	homeobox protein 21