PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009776403.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CPP | ||||||||
Protein Properties | Length: 243aa MW: 26902.6 Da PI: 8.7485 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46.8 | 5.9e-15 | 117 | 156 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C++C+N+ e+ XP_009776403.1 117 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCNNCHNNVEN 156 89**************************.********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 4.2E-16 | 116 | 156 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 19.404 | 117 | 208 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.6E-12 | 118 | 153 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MDDPDCPGCS ATTGQPHVAV DFPAKKLARQ LDFTVFGGSS GQSPTTVMPE QTKQIQPLVK 60 SIQLQRPQTQ QHMVLMPTKQ TAVPTTHPSI RPPLKPDSPR ARPRQSVSEV KDGTPKKQKQ 120 CNCKHSRCLK LYCECFASGI YCDGCNCNNC HNNVENEPAR REAVEATLER NPHAFRPKIA 180 SSPHGARDDK EEIGDVLVLE KHNKGCHCLT TNNCCSSSFS FNSSRSLFVV LSSSRLKGRW 240 VCR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-12 | 108 | 208 | 1 | 90 | Protein lin-54 homolog |
5fd3_B | 1e-12 | 108 | 208 | 1 | 90 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 1e-75 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776403.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 2e-63 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A1U7WCM1 | 1e-180 | A0A1U7WCM1_NICSY; protein tesmin/TSO1-like CXC 5 | ||||
STRING | XP_009776403.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2401 | 24 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-57 | Tesmin/TSO1-like CXC domain-containing protein |