PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009776377.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 515aa MW: 56311.2 Da PI: 7.9243 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.2 | 1.1e-30 | 267 | 325 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ XP_009776377.1 267 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGTHNHP 325 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-33 | 251 | 327 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-28 | 259 | 327 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.562 | 261 | 327 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-36 | 266 | 326 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 268 | 325 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MDKGWGLTLE SSSDKVGFFK NKPFFGFNLS PRLNNIKGGE MFSGAEFPAD EKRPGMVNEV 60 DFFSEKKSIH DVVVKKENSQ GNNTMRTDLF VHQLAQLQVE LERMNTENQR LKGMLTQVTN 120 SYSALQMHLV TLMQQQQQLI SRTESPHNHE VVEVKSEEKN QEKDGDIVPR QFMELGPSSA 180 KADPVDEPSQ SHSTSEERTH SGSPRNNMEM SRDKAIGREE SPESESWVPN KVPKLMNSSK 240 PVEQTTEATM RKARVSVRAR SEAPMISDGC QWRKYGQKMA KGNPCPRAYY RCTMAVGCPV 300 RKQVQRCAED RTILITTYEG THNHPLPPAA MAMASTTSAA ANMLLSGSMP SADGLMNTNF 360 LARTILPCSS NMATISASAP FPTVTLDLTQ NPNAMSNYHQ RNPATQFQVP LPAGLNHPNF 420 VGSMSAPQMP QVLGQALYNQ SRFSGLQVSQ DNIHHPSFSD TLSAATAAIT ADPNFTAALA 480 AAISSIIGGS HPNNGNNPTS GPTSNSNKTS SFSGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-22 | 253 | 329 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776377.1 | 0.0 | PREDICTED: WRKY transcription factor 6-like isoform X3 | ||||
Swissprot | Q9C519 | 1e-142 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A1U7W8N9 | 0.0 | A0A1U7W8N9_NICSY; WRKY transcription factor 6-like isoform X3 | ||||
STRING | XP_009776375.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-120 | WRKY family protein |