PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009776283.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 771aa MW: 84044 Da PI: 6.85

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009776283.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.7e-09	554	591	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + XP_009776283.1 554 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 591 664459******************************88 PP
2	BELL	122.1	2.3e-39	415	486	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+ XP_009776283.1 415 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAIPYTALAQKAMSRHFRCLKDAITAQL 486 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.7E-80	341	484	IPR006563	POX domain
Pfam	PF07526	1.0E-53	346	483	IPR006563	POX domain
PROSITE profile	PS50071	12.568	532	595	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	535	599	IPR001356	Homeobox domain
CDD	cd00086	1.44E-12	535	596	No hit	No description
SuperFamily	SSF46689	3.64E-17	537	602	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.3E-29	538	601	IPR009057	Homeodomain-like
Pfam	PF05920	3.9E-18	552	591	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence Send to blast
MGITSTPPRP SIVTSHNSKG HINPTILHQL SDNLNSMSQD YHHQSLFSFP NGFERSQAEQ 60 QQQQQQQQHM AQQIRRDKLR VQGFEPQPFE EETSGLPVYD QTAGMLSEMF SFPPGTSSEL 120 LEAQFNPNYR HPNPNQRSQP QQIPPPAGMG NEWFGNRQGM VVPLGYAKNH NNQISSAGIN 180 AAESMQLFLM NPQPRSPSPS PSHPPPPPST NSSTLHMLLP NPSSTSTIEG FPNPAEGSFG 240 QFTWGNNGGA SASLNTPNEI GAGVNHVVES QGLSLSLSSS LQHKVEELRM GEESGMLFFN 300 QGGGGSTTSG QFRYKNLNIG NSGVVGQNIH QQVHVGYGSS LGVVNVLRNS KYAKAAQELL 360 EEFCSVGRGK FKKNNKATAA NPNSNNPSGG TNGGGGNNNT SSSSSKDLPP LSAADRIEHQ 420 RRKVKLLSML DEVDRRYNHY CEQMQMVVNS FDLVMGFGAA IPYTALAQKA MSRHFRCLKD 480 AITAQLKHSC ELLGDKDAGT SGLTKGETPR LKMLEQSLRQ QRAFHQMGMM EQEAWRPQRG 540 LPERSVNILR AWLFEHFLHP YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMVEEM 600 YQQEAKEEEE EDDERENSQN QNSGNNAQTP TPNMSNSSST NMTTTTTALG AAAAAAETGT 660 AATTATATAT AASTLGKRSE INAPENDPSL VAINSHISFS ENQATFPTNI HDSDAAACRR 720 GGKFFGDDYG TTTNADVGST MIRFGTTSGD VSLTLGLRHA GNLPENTHFF G

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence Send to blast

MGITSTPPRP SIVTSHNSKG HINPTILHQL SDNLNSMSQD YHHQSLFSFP NGFERSQAEQ  60
QQQQQQQQHM AQQIRRDKLR VQGFEPQPFE EETSGLPVYD QTAGMLSEMF SFPPGTSSEL  120
LEAQFNPNYR HPNPNQRSQP QQIPPPAGMG NEWFGNRQGM VVPLGYAKNH NNQISSAGIN  180
AAESMQLFLM NPQPRSPSPS PSHPPPPPST NSSTLHMLLP NPSSTSTIEG FPNPAEGSFG  240
QFTWGNNGGA SASLNTPNEI GAGVNHVVES QGLSLSLSSS LQHKVEELRM GEESGMLFFN  300
QGGGGSTTSG QFRYKNLNIG NSGVVGQNIH QQVHVGYGSS LGVVNVLRNS KYAKAAQELL  360
EEFCSVGRGK FKKNNKATAA NPNSNNPSGG TNGGGGNNNT SSSSSKDLPP LSAADRIEHQ  420
RRKVKLLSML DEVDRRYNHY CEQMQMVVNS FDLVMGFGAA IPYTALAQKA MSRHFRCLKD  480
AITAQLKHSC ELLGDKDAGT SGLTKGETPR LKMLEQSLRQ QRAFHQMGMM EQEAWRPQRG  540
LPERSVNILR AWLFEHFLHP YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMVEEM  600
YQQEAKEEEE EDDERENSQN QNSGNNAQTP TPNMSNSSST NMTTTTTALG AAAAAAETGT  660
AATTATATAT AASTLGKRSE INAPENDPSL VAINSHISFS ENQATFPTNI HDSDAAACRR  720
GGKFFGDDYG TTTNADVGST MIRFGTTSGD VSLTLGLRHA GNLPENTHFF G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	541	599	5	63	Homeobox protein Meis2
3k2a_B	2e-16	541	599	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF406699	0.0	AF406699.1 Solanum tuberosum BEL1-related homeotic protein 13 (Bel13) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776283.1	0.0	PREDICTED: BEL1-like homeodomain protein 2
Swissprot	Q9SW80	1e-174	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1U7WCA3	0.0	A0A1U7WCA3_NICSY; BEL1-like homeodomain protein 2
STRING	XP_009776283.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-142	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]