PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009776266.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 342aa    MW: 38298.5 Da    PI: 9.5062
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009776266.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.7e-1370114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_009776266.1  70 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 114
                      789*****************77.*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-1664120IPR009057Homeodomain-like
PROSITE profilePS5129415.40865119IPR017930Myb domain
TIGRFAMsTIGR015571.6E-1868117IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-668120IPR009057Homeodomain-like
SMARTSM007175.3E-1169117IPR001005SANT/Myb domain
PfamPF002492.9E-1170114IPR001005SANT/Myb domain
CDDcd001672.20E-872115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVSVYPTPPA GQDFYYIGDP TKMGLPGLHP IQSGSNGAGT LGNLNSSTGS VVPDDHNKKT  60
RKPYTITKSR ESWTEQEHDK FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK  120
SGTSEHVPPP RPKRKAAHPY PQKAPKKVLS QVGSIQFQPP GALPEPGFGI GPDSLAVPGN  180
TINFSPWTYD NVPAISTTHM RKDDAQLSSG GVVQNCSSSS NESMPRICTT KESNAQKESK  240
KQMKDSIWGL LHDMQYQRYH NHVMPDFAQV YRFIGSVFDP STRDHLQRLK KMDPIDVQTA  300
LMLMKNLSFN LLSPEFEDHV SFNQSVTSFL IEEVALIVWL GR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1416251e-169JX141625.1 Cestrum nocturnum MYB mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776266.10.0PREDICTED: protein REVEILLE 6 isoform X2
SwissprotQ8H0W38e-88RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1U7WG790.0A0A1U7WG79_NICSY; protein REVEILLE 6 isoform X2
STRINGXP_009776265.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.27e-76MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]