PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009776266.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 342aa MW: 38298.5 Da PI: 9.5062 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.4 | 1.7e-13 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky XP_009776266.1 70 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 114 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-16 | 64 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.408 | 65 | 119 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.6E-18 | 68 | 117 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.2E-6 | 68 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-11 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-11 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.20E-8 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MVSVYPTPPA GQDFYYIGDP TKMGLPGLHP IQSGSNGAGT LGNLNSSTGS VVPDDHNKKT 60 RKPYTITKSR ESWTEQEHDK FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK 120 SGTSEHVPPP RPKRKAAHPY PQKAPKKVLS QVGSIQFQPP GALPEPGFGI GPDSLAVPGN 180 TINFSPWTYD NVPAISTTHM RKDDAQLSSG GVVQNCSSSS NESMPRICTT KESNAQKESK 240 KQMKDSIWGL LHDMQYQRYH NHVMPDFAQV YRFIGSVFDP STRDHLQRLK KMDPIDVQTA 300 LMLMKNLSFN LLSPEFEDHV SFNQSVTSFL IEEVALIVWL GR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX141625 | 1e-169 | JX141625.1 Cestrum nocturnum MYB mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776266.1 | 0.0 | PREDICTED: protein REVEILLE 6 isoform X2 | ||||
Swissprot | Q8H0W3 | 8e-88 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A1U7WG79 | 0.0 | A0A1U7WG79_NICSY; protein REVEILLE 6 isoform X2 | ||||
STRING | XP_009776265.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 7e-76 | MYB_related family protein |
Publications ? help Back to Top | |||
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