PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009776255.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 650aa MW: 71374.7 Da PI: 7.2977 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.6e-16 | 316 | 375 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_009776255.1 316 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 375 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 45.3 | 2.2e-14 | 420 | 469 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_009776255.1 420 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 469 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.9E-13 | 316 | 375 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.58E-22 | 316 | 383 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-16 | 316 | 385 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.203 | 317 | 383 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-16 | 317 | 384 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-29 | 317 | 389 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 318 | 329 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 418 | 479 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.58E-25 | 418 | 479 | No hit | No description |
PROSITE profile | PS51032 | 19.282 | 419 | 477 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-18 | 419 | 477 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-34 | 419 | 483 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-9 | 420 | 469 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 459 | 479 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 650 aa Download sequence Send to blast |
MKMKSMNDDN NNCSSHRSSN NNNNNSNSHN DASSNWLGFS LSPHMKMEVT SSEPQHQHHQ 60 FNNQSSALAQ SFYLSSSPMN VTSNTSALCY GVGENNPFGH SSLSVMPLKS DGSLCIMEAL 120 SRSHADAMVQ SSSSPKLEDF LGGASQYGNH EREAMALSLD SLYYHQNEGY YSPMHCHGMY 180 QESLLDETKP TQISHCDAQM TAVSGNELKS WGHYAIDQHI NETCSSMVGA GGGGGTSGSG 240 GGTSGSGGGT VGGNDLQSLS LSMNPGSQSS CVTPRQISPN ELECVAIETK KRASGKVVQK 300 QPVHRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK KEGQTRKGRQ VYLGGYDMEE 360 KAARAYDLAA LKYWGPSTHI NFPLENYQKE LEDMKNMTRQ EYVAHLRRKS SGFSRGASMY 420 RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DVAAIKFRGV NAVTNFDISR 480 YDVEKIMASN TLPAGELARR NKEREPIEYN LSDHKNEEAC VQNDNNNNNN GNNVTDWKMV 540 SYQSSNPSLG NYRNPTFSMA LQDLIGIDLM NSSNHPILDD QQNKIGNHFS NASSLVTSLG 600 SSREASPDKS AASLVFAKPT NVNACIPSAQ LRPIPVSISH LPVFAALNDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY461432 | 0.0 | AY461432.1 Nicotiana tabacum ANT-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776255.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-160 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A1U7WPS4 | 0.0 | A0A1U7WPS4_NICSY; AP2-like ethylene-responsive transcription factor ANT | ||||
STRING | XP_009776255.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-143 | AP2 family protein |