PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009775873.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 480aa    MW: 54125.3 Da    PI: 7.4464
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009775873.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.7e-1411743399
                    -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                    +++  led+sg++W+v++  +++ g+  +++GW +F +++gL+ gDf+vF+++ + + f   v++++k
  XP_009775873.1 11 DRETYLEDSSGQRWRVTI--CNHEGSLAIRQGWPKFSSEHGLNLGDFLVFYYVVEvQYF--IVQIYDK 74
                    45789*************..*******************************99754555..9998887 PP
2B331.62.9e-103984731492
                     T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     + l lp +  +++  ++ k e   + l+ ++ + W + +   ++ g  vlt+GWk F+ a gL+ gD ++F+l++  + e+
  XP_009775873.1 398 DFLELPESW-RKYlmKKAKLERWIIFLRGPDKKIWPIIY--HRRAGVDVLTNGWKTFAAAYGLNRGDDCLFELEN--QLEC 473
                     556666665.3665544455667899999**********..9999999************************865..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.394175IPR003340B3 DNA binding domain
SMARTSM010190.028275IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-14979IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-111074IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-131179IPR015300DNA-binding pseudobarrel domain
CDDcd100174.65E-121173No hitNo description
PROSITE profilePS5086310.32385480IPR003340B3 DNA binding domain
SMARTSM010190.0097390478IPR003340B3 DNA binding domain
CDDcd100171.66E-10394469No hitNo description
PfamPF023622.2E-7397472IPR003340B3 DNA binding domain
SuperFamilySSF1019361.53E-12398473IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-11398471IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MFAQSVSHLT DRETYLEDSS GQRWRVTICN HEGSLAIRQG WPKFSSEHGL NLGDFLVFYY  60
VVEVQYFIVQ IYDKSGCQKI KFYSDSGKGK RKTRTYPEAT SQVKLLQTTD INPANKRSKI  120
SAVSESKKVP CKTHIKKFAT NIDADTGKGQ LVYPAVYVDE SFCMIDRDAQ YHQGDDRLCL  180
HLSSFEMPAS KPLAEGTSSL LKADGGNSIH VETNLRSQTE PNLVVVADYL NSEELLPKFE  240
AEITGTDMVP AKDIPLLSQK DQNDCPSGII SSSFLKPAAN INKNDGVSNV TKYQNHWMST  300
DTKSMMLQSD NKDGRCTGSN QITREKSNEA SWFARETRLV KKEYEETAAE AYYPARAISG  360
KEPANGEKVI KSEPADSGDM PSLKAVSYSC LLEVDGRDFL ELPESWRKYL MKKAKLERWI  420
IFLRGPDKKI WPIIYHRRAG VDVLTNGWKT FAAAYGLNRG DDCLFELENQ LECIFAVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775873.10.0PREDICTED: uncharacterized protein LOC104225716 isoform X3
TrEMBLA0A1U7WB550.0A0A1U7WB55_NICSY; uncharacterized protein LOC104225716 isoform X3
STRINGXP_009775871.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.14e-07B3 family protein